Loxodonta africana (African savanna elephant): 100654230
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Entry
100654230 CDS
T04351
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03013
Nucleocytoplasmic transport
lav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100654230 (UPF1)
03015 mRNA surveillance pathway
100654230 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100654230 (UPF1)
Enzymes [BR:
lav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100654230 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100654230 (UPF1)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100654230 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100654230 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100654230
NCBI-ProteinID:
XP_003413575
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGSGAGGAG
GPGGAGAVAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQ
THDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPATGRGTPKGKTGRGGRQ
KNRFGLSGPSQTTLPSSQASQDVVSQPFSQGALTQGYVSMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVPGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttcgcagacgctcacctttctggacaccgaggag
gccgagctattgggcgccgacacgcagggctccgagttcgaattcaccgacttcaccctc
cccagccagactcagacgcccccgggcggccccggaggatccggggcgggaggcgctgga
ggcccgggcggcgcgggcgctgtggccggacagctcgacgcgcaggtcggcgggcctgag
ggcatcctccaaaatggggccgtggacgacagcgtggctaagaccagccagctgctggcc
gagctgaatttcgaggaggacgaggaggacacctactacaccaaggacctcccggtccat
gcctgcagttactgcgggatccacgaccccgcatgcgtggtctactgcaacaccagcaag
aagtggttctgcaacggacgtgggaacacctccggcagtcacatcgtcaaccacctcgtg
agggcgaagtgcaaggaggtgacactgcacaaggacgggccgctgggcgagacagtgctc
gagtgctacaactgtggctgccgaaacgtcttcctgctcggtttcatccccgccaaggcc
gactcggtcgtggtgctgctgtgcaggcagccttgtgccagccagagcagcttgaaggac
atcaactgggacagctcgcagtggcagccgctgatccaggaccgctgcttcctgtcgtgg
ctggtgaagatcccctcggagcaggagcagctgcgggcgcggcaaatcactgcgcagcag
atcaacaagctggaggagctctggaaggagaacccgtcggccacactggaggacctagag
aagccaggtgtggacgaggagccacagcatgtgctgctgcgctacgaggacgcctaccag
taccagaacatcttcgggccgctggtcaagctggaggccgactacgacaagaagctcaaa
gagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagaga
atcgcctacttcactttgcccaagactgactctgacatgcgactcatgcagggcgatgag
atctgcctgcgctacaagggggacctggcgcccctgtggaaagggatcggccatgtcatc
aaagtccctgacaactatggcgatgagatcgccattgagctgcggagtagcgtgggtgcc
ccggtggaggtgacccacaacttccaggtggactttgtgtggaagtcgacctcatttgac
aggatgcagagcgcactgaagacatttgcagtggacgagacctccgtgtccggttatatc
taccacaagctgctgggccatgaggtggaggatgtcatcatcaagtgccaactgcccaag
cgcttcacggcccaggggctccctgacctcaaccattcccaggtttatgctgtgaagact
gtgctgcagaggcctctgagcctgatccaagggcctccaggcactggcaagaccgtgact
tcagccaccattgtctatcatctggcgcgacaaggcaatgggccagtgttggtgtgtgcc
ccaagtaacattgccgtggaccagctgacggagaagatccaccagaccgggctgaaggtg
gtgcggctctgtgccaagagccgtgaggccatagactcgcccgtgtccttcctggcgctg
cacaaccagatcaggaacatggatagcatgccggagctgcagaagctgcagcaactcaag
gacgagactggggagctgtcgtcggctgacgagaagcggtacagggcgctgaagcgcacc
gccgagcgggagctgctcatgaacgctgatgtcatctgctgcacatgtgtgggcgcaggt
gacccgcggctcgccaagatgcagttccgctccatcctcattgatgagagcacacaggcc
actgagcccgagtgcatggtgcctgtggtcctcggcgccaaacagctgatcctcgtgggt
gaccactgccaactgggtcctgtagtgatgtgcaagaaggcggccaaggctggcttgtca
cagtcgctgttcgagcggctcgtggtgctgggtatccggcccatccgcctccaggtgcag
tatcggatgcaccccgcgctcagtgccttcccctccaacatcttctatgagggctcgctg
cagaatggcgtgactgcagcggatcgtgtgaagaagggctttgacttccagtggccccag
cctgacaagcccatgttcttctacgtgacccagggccaggaggagattgctagctccggc
acctcctacctgaacaggacggaagctgccaatgtggagaaaatcacaacaaaactgctg
aaggcgggtgcgaagccagaccagattggcatcatcacaccctatgagggccagcgctcc
tacctggtgcaatacatgcagttcagcggctcgctgcacaccaagctctaccaggaggtg
gagattgccagtgtggacgcattccaggggcgagagaaggacttcatcatcctctcttgc
gtgcgggccaatgagcatcaggggatcgggtttctcaacgacccccgacgcctcaatgtg
gccctaaccagggcaagatacggggtcatcatcgttggcaatccaaaagccctatcgaag
cagccactgtggaaccacctgctcaattactacaaggaacagaaggtgctggtggagggg
cccctcaacaacctgcgggagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaacccaggtgcccgcttcatgaccaccgccatgtatgatgcccgtgaggccatc
atcccagggtcagtctatgaccgcagcagccagggccggccctcgagcatgtactttcag
acccatgaccaaattggcatgatcagcgcaggccccagccatgtggccgccatgaacatc
cccatccccttcaacttggtcatgccacccatgccgccacctggctacttcgggcaggcc
aacggcccagccacaggtcgggggaccccaaaaggcaagactggccgtggggggcgccag
aagaaccgttttgggctctcggggcccagccagacgaccctccccagcagccaggccagt
caggacgttgtctcgcagcccttctcacagggcgcactgacgcagggctatgtctccatg
agccaaccctcgcagatgagccagccgggcctctcccagcctgagctgtcccaggatagt
tacctcggggatgagttcaagtcccagattgatgtggcgctgtcacaggactccacatac
cagggagagcgggcctaccagcacggcggggtgcccgggctgtcccagtattag
DBGET
integrated database retrieval system
