Loxodonta africana (African savanna elephant): 100663865
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Entry
100663865 CDS
T04351
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03030
DNA replication
lav03410
Base excision repair
lav03420
Nucleotide excision repair
lav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100663865 (LIG1)
03410 Base excision repair
100663865 (LIG1)
03420 Nucleotide excision repair
100663865 (LIG1)
03430 Mismatch repair
100663865 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lav03032
]
100663865 (LIG1)
03400 DNA repair and recombination proteins [BR:
lav03400
]
100663865 (LIG1)
Enzymes [BR:
lav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100663865 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
100663865 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100663865 (LIG1)
DNA replication proteins [BR:
lav03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100663865 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100663865 (LIG1)
DNA repair and recombination proteins [BR:
lav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100663865 (LIG1)
NER (nucleotide excision repair)
Other NER factors
100663865 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
100663865 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
100663865
NCBI-ProteinID:
XP_003406544
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
MQRSIMSFFQPKKEGKAKKPEKETSNSSRETEPPPKVALKERNGVVPESESPVKRLVRKA
ARVLSSEEEEEDSALTSLKGQKPAPGSPKASPPSPAASLESIPSPSEASPVEVSPSGIPK
RRTARKQLPKRKIQDVLEEQSGDKERETKRKKEEEEAETPAESVTEPEVAKKKEAEDEDQ
PRMSPKPCKTSEAETPAESTSEPAVGVKKEPQEGDQTKPSPRPSKRISSFFTPRKPATKK
EVKEEGSGAPGEEETKGPLDPADYNPAKNNYHPIEDACWKSGQKVPYLAVARTFEKVEEV
SARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQAT
GRQLESVRAEAAEKGDVGLVAESSRTTQRIMLPPPPLTASGVFAKFRDIARLAGSASTAK
KIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVD
AGKGRTAEARKMWLDEQGMVLKQTFCEVPDLDCIVPVLLEHGLEHLPEHCRLSPGIPLKP
MLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDII
DRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKDVDASEIQVQVCLYAFDL
IYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVRDSCEGL
MVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAT
YDKESEELQAICKLGTGFSDEELEKHHQSLQALVLPSPRSYVRADGAVAPDHWLEPSTVW
EVKCADLSLSPIYPAARGLVDREKGISLRFPRFIRIRDDKKPEEATTSAQVAQLYQAQSQ
IQNQKGASSESDLEDFY
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaacccaagaaggagggcaaagcaaagaagcca
gagaaagaaacctccaacagcagcagagagacggaacctcccccaaaagtggcgctgaag
gagcggaatggagtggtgcccgagagtgagtctccagtgaagagactggtgaggaaggca
gcccgggtcttgagcagtgaagaggaggaggaggacagtgctctcacctctctcaaaggc
cagaaacctgctccaggctctccgaaagcctcccctcccagtcctgctgcatctctggag
agcatcccttccccctccgaagccagtcccgtggaagtctccccatcagggattccgaag
cgtcgcacagctcggaagcagctcccgaaacggaaaattcaggatgtcctggaagaacag
agtggagacaaggaaagagagaccaagaggaagaaggaagaagaagaagcagagacccca
gcagaaagtgtcacagagcctgaagtggcaaaaaaaaaggaagcagaagatgaggaccag
cccaggatgtcacctaaaccctgcaagacttctgaagcagagaccccagcagaaagcact
tcagagcctgcagtgggcgtgaaaaaggagccacaggagggggaccagaccaagccttcc
cccaggccttctaagaggatcagcagtttcttcacccctcgaaagccagccacaaaaaaa
gaagtgaaagaagaggggtcaggtgctccaggagaagaggagacaaagggacccctggac
ccagccgactacaatcctgccaagaacaactaccaccctattgaagatgcctgctggaag
tctggccagaaggtcccctatctggctgtggcccggacctttgagaaggttgaggaggtc
tctgctcggctccggatggtggagacactgagcaacctgctgcgctccgtggtggccctg
tcacctccagacctcctccctgtcctctaccttagtctcaaccgccttgggccaccacag
cagggcctggagcttggcgtcggtgacggcgtccttctcaaggccgtggcccaggccaca
ggtcggcagctggagtccgtccgggccgaggcagccgagaagggtgacgtggggctcgta
gccgagagcagccgcaccactcagaggatcatgttgccccctcccccacttaccgcctct
ggggtcttcgccaagttccgtgacatcgcccgactggctggtagtgcttccacagccaag
aagatagacatcatcaaaggcctctttgttgcttgccgtcactcagaagcccgattcatc
gcccggtccctgagtggacggctgcgcctcgggctggctgagcagtcagtcctggctgcc
ctcgcccaggccgtgagcctcacaccccccggccaagaattccccccggctgtggtggat
gctgggaagggcaggacagcggaggccaggaagatgtggttggatgaacaaggcatggtc
ctgaagcagacgttctgtgaggtgcccgacctggactgcatcgtgccagtcctgctggag
cacggcttggagcatctaccagagcactgcaggctgagcccagggatccccctgaaacca
atgctggcccatcccacccggggtgtcagcgaagtcctaaagcgctttgaggaggcagct
ttcacctgcgaatacaaatacgatgggcagagggcacagatccatgttctggaaggcggg
gaggtgaagatcttcagccggaatcaggaggacaataccgggaagtaccctgatatcatc
gaccgcatccccaagatcaaactcccatcagtcacctccttcatcctggacactgaggcc
gtggcttgggaccgggaaaagaagcaaatccagccattccaagtgctcaccacccgcaaa
cgcaaggacgtggatgcatcagagatccaggtgcaggtgtgtttgtacgccttcgacctc
atctacctcaatggagagtcactggtacgggagcccctctcacgacgccggcagctgctc
cgggagaactttgtggagacagagggtgagtttgtcttcgccacctcgctggacaccaag
gacacagaccagatcgccgagttcttggagcagtcggtgagagactcgtgcgaggggctg
atggtgaaaaccctggatgtggatgctacctacgagatagccaagaggtcgcacaactgg
ctcaagctgaagaaggactacctcgagggagtgggcgacaccctggacctcgtggtgatc
ggtgcctacctgggccgggggaagcgtgctggccgctacgggggcttcctcctggccacc
tacgacaaggagagtgaggagcttcaagccatatgcaagcttggaacgggcttcagcgac
gaggagctggagaaacatcaccagagcctccaggccctggtgctgcccagccctcgctcc
tacgtgcgggccgatggggccgtggccccagaccactggctggagcccagcaccgtgtgg
gaggtgaagtgtgctgacctgtccctctcccccatctaccctgcggcccgtggtctggtg
gaccgtgagaagggcatttcccttcgcttccctcggtttattcgcattcgtgatgacaag
aagccagaggaagccaccaccagtgcccaggtggcccagctgtaccaggcgcagagtcag
atccagaaccagaaaggtgcgagctcggagtccgaccttgaggatttctactaa
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