Loxodonta africana (African savanna elephant): 100676340
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Entry
100676340 CDS
T04351
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100676340 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lav03400
]
100676340 (LIG4)
Enzymes [BR:
lav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100676340 (LIG4)
DNA repair and recombination proteins [BR:
lav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100676340 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
100676340
NCBI-ProteinID:
XP_003414085
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MASVAASQTSPAVASHVPFADLCSTLERIQRSRGRAEKIKHFQEFLDSWRKFHDALHKNQ
KDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTG
TRGDTGDFAMIAYFVLKPRCLQKGSLTIQQVNDILDSVASNNSAKKKNLVKKSLLQFIAQ
SSALEQKWLIRMILKDLKLGVSQQVVFSLFHDDAAELYSVTTDMEKVCRQLHDPSVGLSD
ISITLFSAFRPMLAAIADIRHVERDMKHQSFYIETKLDGERMQMHRDGDVYKFFSRNGYD
YTDQFGDSSQQGSLTPFIHGAFQTNTQNCILDGEMMAYDPNTQSFMQKGNKFDIKRMVED
SDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSGIFTPIPGRIEIVQKTQAHTKKEVIDA
LNEAIDKREEGIMIKYPLSIYKPGKRGEGWLKIKPEYVNGLMDELDILIVGGYWGKGLRG
GMMSHFLCAVAEKPPTGEKPSVFHTVCRVGSGYTMKELYDLGLKLANHWKPFNRKAPPSS
ILCGTEKPEVYIEPCSSVIVQIKAAEIVPSDMYKTDCTLRFPRIEKIREDKEWHECMTLD
ELEQLRGKASGKLASRHLHVDDDDDEPQEKKRKAAVPKLKKAVGIIEHFKAPNLSNINKV
SNIFEDVEFCVMNGIEGHSKPDLENRIAEFGGYIVQNPGPDTACIIAGSENIRVRNIISS
NKHDVVKPDWLLECFKTKSCVPWQPRFMIHMCPSTKQHFALEYDCYGDSYFVDTDLNQLR
EVFSVIKHSNEQTPEEMASAIADLEYRYSWDSSPLSMFRHHTVYLDLYAVINDLSTKIEG
ARLATKALELRFHGAKVVSCLAEGVSHVIVGEDHSHVADFKAFRRTLKRKFKILQEAWVT
DSIDRCELQEENQYLI
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtggctgcctcccaaacttcaccagctgttgcgtcacatgttccttttgca
gatttatgttcaactttagaacgaatacagagaagcagaggacgtgcagagaaaatcaaa
cacttccaggagtttttagattcttggagaaaattccacgatgcccttcataagaaccaa
aaagatgtcacagactctttttatccagcaatgagactcattcttcctcagctagaaaga
gagagaatggcatatggaatcaaagaaactatgcttgctaagctttatatcgaattgctt
aatttgcccagagaaggaaaagatgcccttaaacttttaaattacagaacacccacggga
actcgtggagatactggagactttgcaatgattgcgtactttgtgttgaagccaaggtgt
ttacagaaaggaagcttaaccatacagcaagtaaatgacattttggattcagttgccagc
aataattctgccaaaaaaaagaacctagtaaagaagagtcttcttcagtttatagctcag
agttcagcacttgaacaaaaatggctcatacgaatgattttaaaggacttaaagcttggt
gttagtcagcaagttgtattttctctttttcacgacgatgctgctgagttgtatagtgtc
accacagatatggaaaaagtctgcaggcaactgcatgacccttcagtaggactcagcgat
atctccatcaccttattttctgcctttcgaccaatgctagctgctatagcagacattcgg
cacgttgagagggacatgaagcaccagagtttctacattgagaccaagctagatggcgag
cgtatgcaaatgcaccgagatggggatgtgtacaaattcttctcccgaaatggatatgac
tatactgatcagtttggtgactcttcacagcaggggtccctgacgcctttcattcatggt
gctttccaaacaaatacgcaaaactgtatcctggatggtgaaatgatggcctacgatcct
aatactcagagttttatgcaaaagggaaataagtttgatattaaaagaatggtagaggat
tccgatctgcaaacttgttactgtgtttttgatgtactgatggttaataataaaaagcta
ggacatgagaccctgagaaagaggtatgaaattcttagtggtatttttacaccaatacca
gggagaatagaaatagtgcagaaaacacaagcacatactaagaaagaagtaattgatgct
ttgaacgaagcgatagataaaagagaagagggaatcatgataaaataccctttgtccatt
tacaagccaggcaaaagaggtgaaggatggttaaaaattaagcccgagtatgtgaatggt
ctaatggatgaactggacatcttaattgttggaggctattggggtaaaggtttacggggt
gggatgatgtctcattttctgtgtgccgtggcagagaagccacctaccggtgaaaagcca
tctgtgtttcacactgtctgtcgcgtgggctcaggttacaccatgaaagaactatatgac
ctgggtttgaaattggccaaccattggaagccttttaatagaaaagctccccccagtagc
attttatgtggaacagagaagccagaagtatacattgagccttgtagttctgtcattgtt
cagattaaggcagcagagattgtccccagtgatatgtataaaactgattgcactttgcgt
ttcccacgaattgagaagataagagaagacaaagagtggcatgaatgcatgactctggat
gagttagagcagcttagggggaaagcctctggaaagctcgcatccagacaccttcatgta
gatgacgatgacgatgaaccgcaagaaaaaaagcggaaagctgctgtcccaaagttgaag
aaagctgttggaattatcgaacacttcaaagcacctaatctttctaacataaacaaagtt
tctaatatatttgaagatgtggagttttgtgttatgaatggaatagaaggccattcaaag
cctgatctggaaaacagaattgcagaatttggtggttatatagtgcaaaatccgggccca
gacacggcctgcataattgcagggtctgagaacatcagagtgagaaacataatttcttca
aataaacatgatgtcgtgaagcctgactggcttttagagtgttttaagaccaaaagctgt
gtgccgtggcagcctcgctttatgattcatatgtgtccatcaacaaaacaacactttgct
cttgaatacgactgctatggtgatagttattttgttgatacagatttgaaccaactcagg
gaagtgttctcagtaattaaacattctaacgaacagactcctgaagaaatggcctctgcg
attgctgatctagaataccgatattcctgggacagctctcctctcagtatgtttcgacac
cacacggtttatttggacctgtatgctgttattaatgacttgagtaccaaaattgaggga
gcaagattagctactaaagcgttggagcttcggtttcatggagcaaaagtagtttcttgt
ttagctgagggagtttctcatgtaatcgttggggaggatcatagtcacgttgcggatttt
aaagcttttcggagaacccttaaaagaaagtttaagatcctacaagaagcttgggtaact
gactcaatagacaggtgtgaattacaggaggaaaatcaatatttgatttaa
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