Lelliottia amnigena: A8A57_02100
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Entry
A8A57_02100 CDS
T04400
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
laz
Lelliottia amnigena
Pathway
laz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8A57_02100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laz03019
]
A8A57_02100
03016 Transfer RNA biogenesis [BR:
laz03016
]
A8A57_02100
Enzymes [BR:
laz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A8A57_02100
Messenger RNA biogenesis [BR:
laz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A8A57_02100
Transfer RNA biogenesis [BR:
laz03016
]
Prokaryotic type
tRNA degradation factors
A8A57_02100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Rho_RNA_bind
YqfQ
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ANG91246
LinkDB
All DBs
Position
443517..445967
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAEELHIEGEEQIEGLRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVKGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYVWPKA
VEDQVEGLKEQVPEEAKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDSEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDGELREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTNEAITAFRSVLAELGLELPGGSKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLVAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRYDQVGQRLTGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERAPRNVGKTARDHAKKGSGGKSNGKRRQAGKKVNFEPDSAFRGGKDKPKSAK
PPKAKQEKSAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagccgaaaagtacgcgaatcctatcccaagc
cgcgagttcatcattgaacacttaactaaacgcgaaaaacccgctaatcgtgaagaactt
gctgaagaattacatattgaaggcgaagagcaaattgaaggccttcgtcgccgtctgcgc
gccatggaacgtgacggccagctggtcttcactcgccgccagtgctatgcgctgccggaa
cgtctcgatctgctgaaaggcatcgtcattggccaccgcgatggctttggcttcctgcgc
gttgaagggcgcaaagacgatctctatctctcgtccgagcagatgaaaatgtgtatccat
ggcgatcagatcctggcgcagccgctgggtgccgatcgtaaaggtcgtcgtgaagcgcgc
gttgtgcgcgttctggtgccgaaaaccagccagatcgtgggccgctacttcacggatgcc
ggtgtgggcttcgtggtgcctgacgacagtcgcctgagctttgacattctcatcccgccg
gaagaggtaaaaggcgcgcgcatgggctttgtggtggtcgttgagctgactcagcgtcca
acccgccgcaccaaggcagtgggtaaaatcgtcgaagtgctgggcgataatatggggacc
agcatggccgtggatatggcgctgcgtacgcacgaaatcccgtacgtctggccaaaagcg
gttgaagaccaggttgaaggcctgaaagagcaggtccctgaagaagccaaagtgggtcgc
gttgatttgcgtagcctgccgctggtcaccattgatggtgaagacgcccgcgacttcgat
gatgccgtctactgtgagaaaaaacgcggcggtggctggcgtttatgggtcgcgattgct
gacgtcagctattatgtacgccctggcacgccgctggatagcgaagcgcgcagccgcggg
acgtccgtgtacttcccgtcgcaggttgtgccgatgctgcctgaagtcctctcaaacggt
ctgtgctccctgaatccgcaggttgatcgcttatgtatggtgtgtgagatgaccatctcc
accaaagggcgtctgaccggttataaattctatgaagcggtaatgagttcccatgcacgt
ctgacctataccaaggtctggcacatgctgcagggcgatggcgagctgcgcgagcagtat
gccccgctggtcaaacacatcgaagagctgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggcgggatctccttcgaaagcgaagaggcgaagtttatcttcaacgcc
gagcgccgcatcgagcgtatcgaacagacgcagcgtaacgatgcgcataagctgattgaa
gagtgcatgattctggcaaacatctctgcggcacggtttgttgagaaagcgaaagagcct
gcgctgttccgtattcacgataagccaaccaatgaagctatcaccgccttccgctctgtg
ctggcggagctgggtctggaactgccaggcggcagcaaacctgagccacgtgactacgcc
gaactgctggaatccattgccgatcgtcctgatgcggaaatgctgcaaaccatgctgctg
cgctcgatgaagcaggccatttacgatccggaaaaccgcggtcactttggcctggcgctt
cagtcctatgcgcactttacctcgccgattcgtcgttatccggatctctctttgcaccgc
gccatcaagtatctggttgcgcaggagcagggacacaaaggcaataccacggagaccggt
gggtatcactactccatggaagagatgctccagcttggtcagcactgttccatggctgag
cgccgtgccgatgaagccactcgcgacgtggctgactggctgaagtgcgactttatgctg
gaccaggtgggtaacgtctttaaaggcgtcattgccagcgtcactggttttggtttcttt
gtgcgccttgatgagctgttcattgacgggctggtccacgtctcgtccctggataacgat
tattatcgttacgatcaggtggggcagcgtctcactggcgagtcgggtggtcaaacatac
cgtctgggcgatcgcgtggaagtgaaagtcgaagccgtgaatatggacgagcgtaagatt
gatttcagcctgatttccagcgaacgcgcgccacgtaacgtcggcaaaaccgcacgcgac
cacgccaaaaaagggtctggcggaaaaagtaacggcaagcgtcgtcaggcgggtaaaaag
gtgaacttcgagccggacagcgcattccgcggcggtaaagacaaaccgaaatcagcgaag
ccgccaaaagcgaaacaagagaaaagcgctaaaaagccttccgcgaagacgcagaaaata
gcggctgccacgaaggcgaaacgcgcagcgaagaaaaaagtggcggagtaa
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