Lycium barbarum (goji berry): 132604441
Help
Entry
132604441 CDS
T09483
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 45
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132604441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132604441
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132604441
Spliceosome [BR:
lbb03041
]
Complex A
U2 snRNP components
U2 related factors
132604441
Complex B
132604441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
132604441
NCBI-ProteinID:
XP_060173936
LinkDB
All DBs
Position
7:130869398..130875276
Genome browser
AA seq
1171 aa
AA seq
DB search
MEELKHKSNESKKRNRDNKEDNRDRHYRSSSDKKDRDRDKSSRYDREKSTDREKSSRFER
EKSSSRYEREKSSDREKSSRFEREKSIDRDRGKHKDRHSRGDKEKEKSGKVRDDDERPRE
KVKEREKEREKDREREKIRVHDDDDDERPSREKVKEREKDKEDREERAREKEREREKERE
REKERKRDRERREREREKEKERIREKDRHKGSDDEVDAKDRERKRRKRDNDDHHKERERE
KERKRIDEVLVEKNDKSREEDLEEEQRKLDDEMEKRRRRVQEWQELKRKKEETEREKLGV
DGGSEEPKLGKTWTLDGESDDEDAEGKQHGMDIDMDDDSAKVMDIDDGAGKAVSSPVIEN
GNDGVNEGEDEIDPLDAFMNSMVLPEVEKLNNAVDNNNLDGENSGLLVEKGSKEEKSSKP
KMSTKKTMGRIIPGEDSDSDYEDDVENDGDDPVVEEDDEEFMKRVKKTKVEKLSIVDHSK
IDYPPFRKNFYIEVKEISRMSAEEVFAYRKQLELKIHGKDVPKPIKTWHQTGLSSKMLDT
IKKLNYEKPMSIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGP
IGLIMAPTRELVQQIHSDIKKFTRVMGLSCVPVYGGSGVAQQISELKRGTEIVVCTPGRM
IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQ
VEILARKVLNKPIEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFV
HTQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVK
ELELVINYDVPNHYEDYVHRVGRTGRAGNKGCAITFISEDDARYAPDLLKALQLSEQVVP
DDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSD
SEDEDEGIRKAGGDHSQQAALAHAALVAASKASMASTATPVSAGQLPPNGGLPVALPGGL
GMNIPGATAVAAGNGLPVGPNDVTARATALAAALNLQHNLARIQADAMPEHYEAELEIND
FPQNARWKVTHKETLGPISEWTGAAITTRGQFVPPGKLPGFGERKLYLFIEGPSEQSVKR
AKAELKRTLEDITMQASSLPGSAQPGRYSVV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactgaagcacaaatcgaacgaatcgaagaagcgtaatcgcgataataaagag
gataatcgagatcgtcattatcgttcttcatctgataagaaggatcgagatagagataaa
agtagccgttacgacagagaaaaaagtaccgatagagagaaaagtagtcgatttgaaaga
gaaaaaagtagcagtcgttatgaaagagagaaaagtagcgatagagagaaaagcagtcga
tttgaaagagagaaaagtattgatagagataggggaaagcataaggataggcatagtagg
ggagataaggagaaagagaagagcggcaaagttcgtgatgatgatgaaaggcctagagag
aaagtaaaagaacgtgaaaaagagcgagaaaaggatagggaaagagagaaaattagggtt
catgatgatgatgatgatgaaagacctagtagagagaaagtaaaagagcgagaaaaggat
aaggaagatcgcgaagaaagagcgagggaaaaagaaagggaaagggaaaaagaacgggaa
agggagaaggagaggaaaagagatagagagaggagagaaagagagagagaaaaggagaag
gagcggattcgggaaaaggatagacataaggggagtgacgatgaggttgatgcgaaggat
cgagaaagaaagaggcgaaagagggataatgatgatcatcataaggagagggagagggaa
aaggaaaggaaaagaattgatgaagtattagtagaaaagaatgacaagagtagagaagag
gatttagaagaggagcaaaggaaattagacgacgagatggagaagagaaggaggagagtt
caagaatggcaagagttaaaaaggaaaaaagaggaaactgaaagggagaagcttggggtt
gatggaggtagtgaagagccgaagttgggtaaaacgtggactttggatggcgaatctgat
gacgaagatgctgagggtaaacaacatgggatggatattgatatggatgatgatagtgcc
aaggttatggacattgatgatggggctggcaaggctgttagttcgcctgttattgagaat
gggaatgatggtgtaaatgagggcgaagatgagattgacccgttagatgcttttatgaac
tctatggttttgcctgaagttgagaagctgaacaatgccgtagacaataataatcttgat
ggtgaaaattccggtcttttggtagagaagggcagcaaagaagaaaagtcgtctaagcct
aagatgagcaccaagaaaaccatgggaagaattatccctggtgaagattctgattcggat
tatgaggatgatgttgagaatgatggtgatgatcctgtggtggaagaagatgatgaagaa
tttatgaaacgggtgaagaaaaccaaggtggagaaattgtcaattgttgaccattcaaaa
attgattatcctcctttcagaaagaacttttatatagaagttaaggagatttcaagaatg
agtgctgaagaggttttcgcttacaggaaacaactggaattgaagatccatggcaaggat
gttccgaaaccaatcaaaacatggcatcagacgggactgtcctcgaagatgctagacact
ataaagaaactgaattacgagaagcccatgtctatccaagctcaggctttgccagtaatt
atgagtggccgagattgtattgggattgctaagacaggttctggtaaaacgttggcattt
gtgttaccaatgctgagacatattaaggatcagcctcctttgatgtctggtgatggtcct
attgggctgataatggcacctacaagagagcttgtgcagcaaatccatagtgatattaag
aagttcacaagagtgatgggtctcagttgtgtacctgtgtatggaggttctggtgtagct
caacagatcagtgaattgaaacgaggaactgaaattgttgtgtgcactccaggtaggatg
attgatatactctgtacaagtggtgggaagattacaaatctgcgaagagtcacttacttg
gtcatggatgaagctgatcggatgtttgatatgggatttgaaccccagatcacaagaatt
gttcaaaacacacgtccggaccgtcaaacagtcctgttctctgcaacttttcctcgtcag
gttgaaatactagctcgtaaagttttgaacaaacctattgaaatacaggtaggtggtagg
agtgttgtgaacaaggatataacacaattggttgaggtgaggccagaaagtgatagattt
cttcggcttcttgaattacttggtgaatggtacgaaaaaggtaaaattttgatatttgtt
cacacacaggagaaatgtgatgctttatttagggatttgctcaagcatggttatccttgc
ctctcccttcacggggcaaaggatcagactgatcgtgagtccaccatatccgactttaaa
agtaatgtatgtaatttgttgattgctactagtatagcagccaggggtttagatgtcaaa
gaacttgaactggtaatcaattatgacgttccaaaccattatgaggactatgttcatcgt
gttggtcggactggtcgagctggtaataaaggttgtgccatcactttcatatccgaagat
gatgcaagatatgctcctgatcttctaaaagctttgcaactgtcggagcaagtggttcca
gatgaccttaaagctcttgcggatggtttcatggtgaaggtgaatcagggacttgagcaa
gcacatgggactggttatggtggtagtggttttaagtttaacgaagaagaggatgaagtg
agaagagcagccaaaaaagcacaggcaaaagaatatgggtttgaggaagataaatcagat
tcagaggatgaagatgaaggaattagaaaagcaggcggtgaccacagtcagcaggctgcc
cttgctcatgctgctcttgttgctgcttccaaagcgagtatggcttcaacggcaactcca
gtttcagctggtcagcttcctcccaatggtggattacctgttgcattgcctggtggactt
ggtatgaacataccaggtgctacagcagttgctgctggaaatggactgccagttggcccg
aatgatgtgacagccagagcaacagcattggcagctgctttgaacttgcagcataactta
gcaaggattcaggctgatgcaatgcctgaacattatgaagcagaattagagataaatgat
tttcctcaaaatgctcgctggaaggttacacacaaggagactctgggtcctatttctgaa
tggacaggagctgccatcaccactcgaggacagtttgttccacctggcaagttaccaggg
tttggggaaaggaagctgtacttgttcattgagggaccctcggaacaatctgtcaagaga
gcaaaagcagaactgaaacggactttggaggacatcaccatgcaggcatcatcgcttcct
ggttcggctcaacctggcagatactcagttgtttaa
DBGET
integrated database retrieval system
