Lycium barbarum (goji berry): 132616981
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Entry
132616981 CDS
T09483
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132616981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbb03041
]
132616981
03009 Ribosome biogenesis [BR:
lbb03009
]
132616981
Enzymes [BR:
lbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132616981
Spliceosome [BR:
lbb03041
]
Complex A
U1 snRNP components
U1 related factors
132616981
Complex B
132616981
Ribosome biogenesis [BR:
lbb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132616981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132616981
NCBI-ProteinID:
XP_060187798
LinkDB
All DBs
Position
11:71333417..71350009
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AA seq
584 aa
AA seq
DB search
MAAPTYAPEDPTLPKPWKGLVDGTTGYIYFWNPETNDTQYERPIPSSNGVSAPPHHKFVS
SSVQKPQNARSSSDHSRDGTSIHEGYGSLGVGTDISQGSYCRHNEISVTGGDVPAPLTSF
EATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFIHL
QNRRSNPQLGPTILILSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSRG
VDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKELPKQRQTLM
YTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVLMPMEKQRRVEQILRSK
EPGSKIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQSERDYVLSQFRTGRSPVLVATD
VAARGLDIKDIRVVINFDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALDLVKV
LEGANQSVPTELRDMASRGGGMGRSRWGSGQGGRGGLFNGSYGQNGGRGGWTNPSERGGG
RGYDRGSRDSNRYGALDADASRKRSRSRSPNRGSGWSDKKSRFT
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggccgctccaacctatgcaccagaagaccctaccctccccaaaccatggaaaggccta
gttgacggtacaactggatacatttacttctggaatccagagaccaatgatacccaatat
gagaggcctattccctcttccaatggagtgtctgctccaccacatcataagtttgtgagt
tcatctgttcaaaagcctcagaatgcgagaagcagttctgatcattctcgtgatggaaca
tctattcatgaaggctatggttctctaggtgtaggaactgacatatctcaaggatcctac
tgccgccacaatgaaatctctgttacgggaggtgatgttcctgcacctttgacatcattt
gaagcaactggatttccttcagagattgtgagggagatgcatcaagctgggttttccgct
cctactccaattcaggcacaatcatggcctattgcccttcagggccgtgacatagtagct
attgcaaagactgggtctgggaaaactctgggttacttgatacctggatttattcatcta
caaaatcgtcgcagtaatcctcaattaggcccaactattttgatactgtcaccaacaaga
gagttagccacgcagatacaagctgaagctgtgaagtttgggaaatcctctaggatatct
tgcacgtgcctgtatggaggtgctccaaaaggtcctcaactacgagagctgagtaggggt
gtagatattgttgtagccactcctggtcgtttgaacgacattttggaaatgagaagagtt
agtcttggtcaagtttcttacttggtgttagatgaagcagatcgtatgctggacatggga
tttgaacctcagataaggaagattgtgaaggagctgcctaagcagaggcagacattgatg
tatacagctacatggcccaagggggttcgtaagattgcagcagatctattggttaattca
gttcaggttaatattggtaatgttgacgagcttgttgcaaacaagtctataacacagcac
attgaagtcttgatgccgatggagaaacagcggcgagtagaacaaatcttgagatccaaa
gaacctgggtcaaagatcattattttctgttcaacaaagaaaatgtgtgaccaactatct
cgcaatcttactcgcaactttggagcagctgcaattcatggggataaatctcagagtgag
agggattacgtattaagccagtttcgcaccggcaggtctcctgtgcttgtggctactgat
gttgctgcgcggggcttggacatcaaagatatcagggtggtgataaattttgactttcca
actggaatagaggattatgtccacagaattggtagaacaggccgggcaggggcatctggt
ctggcctacacatttttctccgaccaggattctaagcatgctttagatcttgttaaagtt
ttagaaggcgcaaatcaatctgtgccaactgaactgcgtgatatggcttcacgaggtggt
ggtatgggaaggtctaggtggggttctggccaaggtggacgtggtggactctttaatggt
agctatgggcagaatggaggaaggggaggttggactaatccatcagaaagaggtggagga
cgtggttatgaccggggatcacgtgacagtaacagatatggtgccctcgatgcggatgct
tcacggaagcgtagtcgtagcagaagccccaataggggttcaggatggagtgataaaaag
agccggtttacttga
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