Lycium barbarum (goji berry): 132640124
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Entry
132640124 CDS
T09483
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
132640124
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lbb01002
]
132640124
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lbb04121
]
132640124
Enzymes [BR:
lbb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132640124
Peptidases and inhibitors [BR:
lbb01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
132640124
Ubiquitin system [BR:
lbb04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
132640124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
ubiquitin
SASP
Malt_amylase_C
DGCcoil
Motif
Other DBs
NCBI-GeneID:
132640124
NCBI-ProteinID:
XP_060212547
LinkDB
All DBs
Position
5:2852827..2876034
Genome browser
AA seq
1116 aa
AA seq
DB search
MTLLTPSPIDPEDHEMLVPSSDFPTEGPQPMEVAPADTASTVDAQSVDDPASARFTWTVD
NFSRLNVKKLYSDAFNVGGYKWRILIFPKGNNADHLSMYLDVADAATLPYGWSRYAQFSL
AVINQIHNKFTVRKDTQHQFNARESDWGFTSFMPLSELYDPGRGYLKDDTVIIEADVAVR
KVIDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDNPTGSI
PLALQSLFYKLQYNETSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV
EGTIQKLLEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCCDVYASFDKYVEVERLEGD
NKYHAEQHGLQDARKGVLFIDFPPVLQLQLKRFEYDFVRDVMIKINDRYEFPLQLDLDRE
NGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWYKFDDERVTKEDTK
RALDEQYGGEEELPHTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICDVDEKDIAEHL
RIRLKKEQEEKEQKRKEKAEAHLYTIIKVARDKDLGEQIGKEIYFDLVDHDKVHSFRIQK
QMPFAQFKEEVAKEFGIPVQFQRYWLWAKRQNHTYRPNRPLTAQEEVQSVGQLREVSNKA
NNAELKLFLEVEFGLDLQPFPPQETTKEDILLFFKLYDPLKEELRYVGRLFVKGSGKPLE
ILVKLNELAGFSPDEEIELFEEIKFEPNVMCEHINRNLTFRGCQLEDGDIICFQKSLQKQ
GNEKYRFPEVPSFLEYVHNRQVVRFRSLEKPKEDEFSLELSKQNNYDEVVECLARHLHLD
DPSKVRLTSHNCYSQQPKPQSIRYRGVDRLTEMLSHYNQTSDILYYEVLDIPLPELQGLK
TLKVTFYHAAKDEVTVHTIRLPKQSTIGDVLNDLKTKVELSRPDAELRLLEVFYHKIYKI
FPLNERIENINDQYWTLRAEEIPEEEKDLGPHSRLIHVYHFMKDTAQNQTQIQNFGEPFF
LVIHEGETLTEVKARIQKKLQVSDEEFAKWKFAFLSMGRPEYLEDSDIVSNRFQKRDVYG
AWEQYLGLEHTDNAPKRSYAANQNRHNFEKPVRIYN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgactcttctcactccttctccgatagatccagaagaccacgaaatgcttgttcctagt
tctgactttcccaccgagggacctcagcctatggaagttgcaccagcggacacggcaagt
acggtggatgcacagtcggtggatgatccagcatcagcccggttcacatggacagtcgac
aatttttcaaggttaaatgtgaagaagttgtactctgatgcttttaatgtaggaggatat
aaatggaggattctgatattcccaaaagggaacaatgcagaccatttatcaatgtattta
gatgtggcagatgctgcaacattgccttatggttggagtagatatgctcagtttagctta
gctgttatcaaccaaattcataacaagttcacagtaagaaaagatactcagcaccagttt
aatgcaagggagagtgactggggtttcacatcgttcatgcctcttagtgaactatatgat
cctggaagaggttatcttaaggatgatacagtcataattgaagctgatgttgccgtccgt
aaagtaattgattactggtcccatgactctaaaaaggagactggttatgttggccttaag
aatcagggagccacttgttatatgaactctctcctccaaacattataccatattccttat
tttagaaaggctgtgtatcatatgccaacaactgagaatgacaatccaactggcagcatc
cctttagctttgcagagtttgttttataagctccagtataatgaaactagtgtagcaaca
aaagagttgacaaagtcctttgggtgggacacctatgattctttcatgcagcatgatgta
caagaacttaacagggttctttgtgaaaagctcgaagataagatgaagggaactgttgta
gagggcacaatacaaaaattacttgaggggcatcatatgaattacattgaatgtatcaac
gtggactacaaatcaacaagaaaagaatctttttatgatcttcagcttgacgtgaaaggg
tgttgtgatgtgtatgcttcatttgacaagtatgttgaagtggagcgccttgagggtgac
aacaaataccatgcagaacaacatggtttacaggatgctcggaaaggtgtccttttcatt
gacttccctcctgttcttcaacttcagttaaaacgcttcgaatatgattttgtgcgggat
gttatgatcaagataaatgatcgatatgagttccctttgcaacttgatcttgatagagag
aatggaaaatatttatctccagatgctgatcgaagtgtccgcaatctctatactctgcac
agtgttttagttcacagcggcggggtgcatgggggacactattatgcatatatcaggcca
acactctctgatcaatggtataaatttgatgatgagcgtgtgacaaaagaagatactaag
agagctctcgatgaacagtatggtggtgaggaagagttaccccacacaaatcctgggttc
aacaattcacctttcaaattcacaaaatattcgaatgcgtatatgcttgtctatatacgt
gaaagtgacaaggaaaagatcatatgcgatgtggatgagaaggacatagccgagcatctc
aggataagactaaagaaggagcaagaagaaaaggaacaaaagagaaaggagaaagcagag
gctcacctctatacaatcatcaaggtagctcgtgacaaagaccttggtgaacaaattgga
aaggagatctattttgatcttgtggatcatgataaagtgcatagtttccgtattcagaag
cagatgccatttgctcaattcaaggaagaagttgctaaagaatttggtataccagtgcaa
tttcaacgctactggctatgggcaaagcgccaaaaccatacatatcggcctaatcgtccg
ttgacagcccaagaggaagttcaatccgttggccaactgagagaggtttccaataaagca
aataatgctgagctaaaattgtttttggaagtagaatttggcctggatttgcaacctttt
cctccacaagagacgaccaaggaagatatccttctatttttcaaactttatgaccctttg
aaagaggagttaaggtatgttggacggctttttgtaaaaggaagtggcaagccgctggag
atattagtaaagctaaatgagttggctggcttttcgcctgatgaagaaattgaacttttt
gaggaaataaaatttgaaccaaatgtgatgtgtgaacacattaacaggaatctgactttt
cgtggctgtcagctagaagatggggatattatctgctttcagaaatcccttcaaaagcaa
ggcaatgaaaaatatcgttttccagaggttccttcatttttggagtacgtgcacaatcgc
caggttgttcgctttcgctcattggagaaacccaaggaggacgagttcagtcttgagttg
tcaaagcagaacaactatgatgaagttgttgaatgcttagctcgccatcttcacttggat
gatccatcaaaagtaaggcttacatcacataactgctactcacagcagccaaaacctcag
tcgataaggtatcgtggagttgatcgtctcacagaaatgctcagtcactacaatcagact
tcagatattctgtattatgaagtcctggatattcctttaccagagctgcagggcttaaaa
actctcaaagttactttttatcatgctgccaaagatgaagtgactgtccatactattaga
ttgccaaaacaaagcaccataggagatgttcttaatgatctgaaaacaaaggttgaattg
tcaaggccggatgctgaactaagattgctggaagttttttaccacaagatatataagatt
tttccccttaatgaaaggattgagaacattaatgatcaatactggacgctacgtgcagag
gagattcctgaagaggagaaagacctgggtcctcatagtcgcttaattcatgtttatcat
tttatgaaggacacagctcaaaatcaaacacaaatacagaactttggtgagccctttttc
ctggttattcatgagggcgagacattgactgaagttaaagctcgcatccagaaaaaattg
caggtttcagatgaggagtttgcaaagtggaaatttgcatttttatccatgggtcgtccc
gagtaccttgaggactcagatattgtgtccaaccgttttcagaaaagagatgtatatggt
gcttgggagcagtaccttggattagagcacactgacaatgctccaaaaagatcatatgct
gccaaccagaaccgacacaattttgagaagcctgttcggatctacaactag
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integrated database retrieval system
