Laccaria bicolor: LACBIDRAFT_305524
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Entry
LACBIDRAFT_305524 CDS
T01044
Name
(RefSeq) DNA ligase IV
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LACBIDRAFT_305524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbc03400
]
LACBIDRAFT_305524
Enzymes [BR:
lbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LACBIDRAFT_305524
DNA repair and recombination proteins [BR:
lbc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
LACBIDRAFT_305524
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
Solute_trans_a
Motif
Other DBs
NCBI-GeneID:
6070492
NCBI-ProteinID:
XP_001874645
JGI:
305524
UniProt:
B0CUG3
LinkDB
All DBs
AA seq
1059 aa
AA seq
DB search
MMQPTPAPSSAPNSPERKLEPLAESQTYPAPPQNVGSAPFGVLVGLFDKLQVERKQDRRR
KLIETWFNHWREEKGYDLYPVLRLILPQKDRERAVYGLKEKNLAKTYIKLIPLGMRDPDA
IRLLNWKKPTEREKTSGDFPTVLYEVVSKRSSVIEGSLSIDELNDILDELAKNMGKQDIQ
SGILRRIYNRSTAQEQRWIVRIILKDMIISVKETTIFSVFHPDAQDLYNTCSDLKKIAWE
LWDPSFRLNAEDKAVQLFHAFAPMLCKRPTKKIEETVREMSGSEFFIEEKLDGERMQLHK
RGNEYLYFSRKGKDYTYLYGKHVGTGSLTPFIDKAFDPRVDDIILDGEMLVWDPVSERNL
PFGTLKTAALDKSKKEHNPRPCFKVFDLLYLNGQSLLHKSTAFRKKNMRNCLKEITGRIE
YAVDYKGTTAKDIRKRMDEVMGNRGEGLVIKHPLSKYVLNGRNMDWIKVKPEYMDNMGET
VDVLVVAGNYGTGKRGGGVSTLICAVLDDRRANEDDEEPKYSTFVRIGSGLSFADYVWVR
DKPWKVWDPKHPPEFLQTAKRTHEDKGDLYLEPEDSFILKVKAAEITPSDQYHMGFTMRF
PRALSIRDDLSIADCMTATAVFESLRSEKKRKMESDAGVSSKKRKTTAKKATVLPAYKGP
NLKGVRVKTDILDGLKFGELLASCSIYQVLIRLTPVVMADPKSRTGDEERKELMKLIHAN
GGSCAQVANNQPELFIVYEGNTIPYDLKLLIDKNVYDVIKPNWITDSVALGEPAPLRKKY
FFRATDERASTDEYMQEDEDQAFEAPTLKEDPSAKLEEEMVPKVEEQEYDIDPSLADWLK
IDDKNEKLHAEAKEEQDDYSATDDDSDNADVLEPEEVDLDDWLKVESADEPSVIASAATG
SESLSTDCVDVKMGETEAAMEYDQDLIFKHLCFYLDSPENAQRNQMIVKTRYEKDIKQRH
VVVLRVCIEPVTDCAPPSFVDLSKVIADNGGKIVDLDEPKLTHIIIDKRDDSRRLELMKR
TSKRRLIISEYVQACLDEGTLLDEDGAYHFRDDRRGCLT
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaccaactcctgctccatcttccgccccgaattctccagaacggaaacttgaa
cccttagcagagtcacaaacatatcctgcgccccctcagaatgttggaagtgcacctttt
ggagttcttgttggtctctttgacaagcttcaagttgaaaggaaacaggacaggcggagg
aagttaatcgagacgtggttcaatcactggcgtgaggagaaaggatacgatctttatccc
gtcttgcgtttgattctacctcagaaagaccgagaacgtgctgtctatggcttgaaagag
aaaaatcttgcgaaaacctacattaagttgattcctttgggcatgcgagatcctgatgcc
atccgtcttttgaactggaagaaaccaactgaacgagaaaaaacctcaggagattttccg
actgttctgtacgaggtcgttagcaagcggtcctccgttattgagggatctttgtctatt
gacgagttgaatgacatccttgacgaactggccaaaaatatgggcaaacaagacattcag
tcgggtatcttgcgacggatatacaaccgttcgacggcccaagagcaacgctggatcgtt
cgtattatattgaaagatatgatcatatctgtaaaggagaccactattttttcagtgttt
cacccagatgctcaggacctatacaatacttgttccgatctcaaaaagattgcatgggaa
ctttgggatccttccttcaggctcaacgcggaagataaagcagtccagttatttcatgct
ttcgcgccaatgttgtgtaagcgtccaacgaagaagatcgaagaaactgtccgagaaatg
agtggttccgagttctttatagaggagaaactcgacggagagaggatgcaactgcacaag
agaggcaacgaatatttatatttttctcggaaaggaaaggattacacatatctgtatggg
aaacacgttggcacgggaagcttgactccgtttatagacaaggcctttgatcctcgagtg
gacgatataattttagacggtgaaatgctagtttgggatcctgtgtctgagcgtaatcta
ccgttcgggacattgaagacggcagcactcgacaagtctaagaaagagcacaacccgcgc
ccttgtttcaaagtttttgatcttttgtacctgaacggtcaatcccttctccataaatcg
acagcttttcgaaagaagaatatgcgaaactgcctcaaggagatcaccggaagaattgaa
tatgcggtcgactacaaaggcactaccgcgaaagacatccgaaaaagaatggacgaagtg
atgggtaaccgcggtgagggcttggttatcaaacatccgttatccaagtacgttttaaat
ggaaggaatatggattggatcaaggtgaaacccgaatatatggataatatgggagaaact
gttgatgttctcgttgttgccgggaactatggaactggaaagcgtggtggaggcgtttca
acgctcatctgtgctgtcttggatgaccgccgagcaaacgaggatgacgaagagccaaaa
tacagcacctttgttcgtatcggttctgggctgtccttcgccgactacgtttgggtgaga
gataaaccatggaaggtctgggatccaaagcatccccccgaattccttcagactgccaag
cggactcatgaagacaagggagacctctatctagaaccggaggattcatttatactgaaa
gtcaaagctgctgagatcacgccgtcagatcaatatcatatgggctttaccatgcgattc
ccccgtgccttatccatccgagacgacttaagcattgcggattgcatgactgctacagct
gttttcgaaagcctgcggtcggagaagaagcgcaaaatggagagcgacgcgggagtatcc
tccaagaaacgcaaaacaacagcgaaaaaagcaactgtcctcccagcatataagggccca
aatttgaagggagtacgagtaaagacggatatcctggatgggctaaagtttggcgagctc
cttgcttcctgctccatctatcaggtgcttatacgccttactccagtggttatggcggat
cctaaatccagaacgggtgatgaagaaaggaaagaactgatgaaattgattcacgccaac
ggcggatcctgtgcccaagttgccaataatcaaccagaattgttcattgtatatgagggc
aataccattccgtatgacttgaagctgctgatcgacaaaaatgtgtacgatgtgataaag
ccaaattggatcacagattcagtggctctaggcgagcctgctcccttgcgcaaaaaatat
ttctttcgtgcgacggacgagcgggcatcgacggatgagtacatgcaggaggacgaagac
caggccttcgaagcacccacgctcaaagaagacccgagtgcgaagctcgaggaggaaatg
gttccaaaagttgaggaacaagaatatgacattgatccctcgttggcagattggctcaag
attgatgataagaatgaaaagcttcatgcggaggccaaggaggaacaggatgattattcc
gcaactgacgacgattccgacaacgctgacgttttggaaccggaagaggtggatctggat
gactggctcaaagtggaatccgcggatgagccttctgtcatagcttctgcagctacagga
agtgaatcactgtctaccgactgtgtggacgtgaagatgggagaaacggaggccgcaatg
gaatacgaccaagatcttatcttcaagcatctatgcttctacctcgactctccagaaaac
gctcagcgaaaccagatgatcgtgaaaaccagatacgaaaaggatatcaagcaaaggcat
gttgtggtcctccgtgtgtgcattgagccagtgactgattgtgcaccgcccagctttgtc
gacctctcaaaagtgatcgccgataacgggggaaagattgtcgacctcgacgaacccaag
ctgactcatattattatcgacaagagggacgacagtcggcgcttggagctcatgaagcgc
acatcgaaacgacgtctgattatatcggagtacgtgcaagcatgcttggacgaagggaca
cttcttgacgaagatggtgcgtatcatttccgggacgaccgacgagggtgtctaacgtag
DBGET
integrated database retrieval system
