Leishmania braziliensis: LBRM_06_0240
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Entry
LBRM_06_0240 CDS
T01113
Name
(RefSeq) putative 5'-3' exonuclease
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
lbz
Leishmania braziliensis
Pathway
lbz03008
Ribosome biogenesis in eukaryotes
lbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LBRM_06_0240
09123 Folding, sorting and degradation
03018 RNA degradation
LBRM_06_0240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_06_0240
03009 Ribosome biogenesis [BR:
lbz03009
]
LBRM_06_0240
03016 Transfer RNA biogenesis [BR:
lbz03016
]
LBRM_06_0240
03036 Chromosome and associated proteins [BR:
lbz03036
]
LBRM_06_0240
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
LBRM_06_0240
mRNA degradation factors
5'-3' decay
5' exonucleases
LBRM_06_0240
Ribosome biogenesis [BR:
lbz03009
]
Eukaryotic type
Pre-60S particles
RNases
LBRM_06_0240
Transfer RNA biogenesis [BR:
lbz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LBRM_06_0240
Chromosome and associated proteins [BR:
lbz03036
]
Eukaryotic type
Gene silencing
piRNA pathway
LBRM_06_0240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
SH3_12
XRN1_D2_D3
DUF4901
Motif
Other DBs
NCBI-GeneID:
4961155
NCBI-ProteinID:
XP_001561961
UniProt:
A4H4J2
A0A3P3YYA4
LinkDB
All DBs
Position
6:complement(83162..87703)
Genome browser
AA seq
1513 aa
AA seq
DB search
MGVPKFFRWAAERFPSIITPFKDSPPPVDNLYLDINGIIHNCTHPNDVDATRRSPTEKEM
IQAMFIYLEKLFNAIQPRKYFLLAVDGVAPRAKMNQQRQRRYRAGYEMMVAREEALAMGE
EVPEEKDMFDSNCITPGTPFMVRVSTEFQYFITMKLSTDPAWQRCEIIFSGHDCPGEGEH
KIVDFIRRRKMQPNYDPNETHCMYGLDADLVMLALATHEPHFVLLREVVTFGPGSRKERE
RQEEDEAKGLVKDKAYHKADEFVLLHISVFRDYLQLEVKDYLAKSKSSTKIDFERIIDDF
VFMCFFIGNDFLPTLPTIGINDGSIPVLLRLYVDNLLSKNRYLTHKGEIDWRNAEVWLNE
VGKLEFETLRRRQQEEAEYQKNRARRDPTHEVDTTSAMPITSILEFKQRYYGEKHGFVGG
WDANSEDMRRLREHYVEGLMWVMHYYYQGVPSWKWFFPHYYAPMASDLVNLPGISARVTF
EVGKPFQPHQQLLAVLPPMSYLSMPKAYWSLLRSPSSPLAKYLPEHIVIDREGARAPWEG
IVLIPFIDERTLLAAYESVQQNVSPEDAANNVNGPPLRFRYDGKMTPYELEDQMFGSLRN
VFVRRETYAFPPIDKFIPQLCPGVHVGTQQLEGFSTLQSKRDLIQTIFEAGVVTIFGRPT
KNDSLILQMRDFFKAKSIDQVATLVGKEVLVGFPHYKRARVACVKDVHKCITALYSKEGT
FSGTEEHKNNRDESAAFLREAETHARFMKSQLGLAVEQVHVLVYVHRFNGMQVTRKGRIE
RHFSTTWTCYPIHLICTLESIDMREDSRYVERYRSEGDSAFGARCVYIGPQPKSKKSQVD
VYGCCGTVLTTGQHDTATQQGDQLTVRLKVFQEPLRLPEELLQFAALRNWTALPQVAASL
DILPHTLTSICSSLVTSPQFGSRELGLCLKFSGRCIAKVGYAKLVQHNFNPWYVGNKDIF
SRMEKDTEDIGYHLEMGEKGDFAGNSSNNRGGSGTWYFSRDAQELIHDYVKRFRPLIQYI
EAGGVNSRSLEPQQFLTGKWRDKDAAEVLTDIETFLIESGLRETPMITATEEAFPQQLLE
QLEMSLQEQQSRSFKELSLRQVSRNQLYFPVTYSSSGHLVPLPLPKEQTFSLGSRVTNCR
ATGTVPFGMQGTIVRLLASGREAEVVYDTPFTGGTRLDGRLKDTRAAITKLSALLVLKST
DAPQPQPEAQAQPQSQPDMRAASTASTDGSARLRELEFLLQANGIHIDPSGKSTGSPPSL
PAAFQNPATTAARAGLADSGASHSLTAGASASVVPRPRSAAAPEQTPASATPGKRSTPAS
ATAHLFSSASSLASATGESHTSPASLKITAAPGSSGISLQDLAKHLPTSTSQLSPVRVAS
PASHAPALTAAAATTTTAPTGITIPAPKSAQQHQHSPQPVSPPPPAPATAAAASVGTASL
HPSNESKEASPGLTTCPKPRSLHVIPGDFLSGQFKIKYTNTGSLFRSWLNTFTAEAVSKT
LAELEAGENANPT
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcccaaattcttccgctgggcggcggagcgcttcccctccatcatcacccct
ttcaaggactcgccaccaccggtagacaacctctacctcgatatcaacggtatcatccac
aactgcacgcacccgaacgatgtagacgcaacgcggcgcagcccgacagagaaggagatg
attcaggctatgttcatctatctcgagaagctcttcaatgccatccagccgcgcaagtac
ttcctgcttgccgtcgatggtgttgcgccgcgcgcgaaaatgaatcaacagcgccagcgc
cgctaccgcgccggttacgagatgatggtcgcgcgcgaggaggcgctcgcaatgggtgaa
gaggtgccggaggagaaggacatgttcgacagcaactgcatcactcctggtaccccattc
atggtgcgtgtgagcacggagtttcagtatttcatcacaatgaagctgtccaccgatccg
gcgtggcagaggtgcgagatcatcttctccggccacgactgccctggtgagggcgagcac
aagatcgttgatttcatccgccggcggaagatgcagcctaactacgaccccaacgagacc
cattgcatgtacggcctcgatgccgatctcgtcatgctggcgctcgccacacacgagcca
cactttgtactgctgcgcgaggtcgtcacgttcggtcccggctctcgcaaggagcgggag
cggcaagaggaggatgaggcaaaaggcctcgtgaaggacaaagcgtaccacaaggcggac
gagtttgtgctgctacacatcagcgtattccgcgactacctccaactagaggtgaaggac
tacctggcaaagtcgaagagcagcacaaaaatcgactttgagcgcatcattgacgacttc
gtcttcatgtgcttcttcattggtaatgactttctgccgacactgccgaccatcggcatc
aacgatggcagcataccagtgctcctgcgcctctacgtggataacttgctcagtaagaac
aggtacttgacgcacaagggtgagatcgactggcgcaacgccgaggtgtggctgaacgag
gtgggcaagctcgagttcgagacgctgcgccgccgtcagcaggaggaggcggagtaccag
aagaaccgcgctcgccgtgaccccacccacgaggtggacaccacctccgcgatgcctatt
acatcgatcctggagttcaagcaacgctactacggtgagaagcacggcttcgttggcggc
tgggacgcgaacagtgaagacatgcgccgactgcgggaacactacgtggaggggctcatg
tgggttatgcattactactatcaaggcgtgccttcatggaagtggttctttccgcactac
tacgcacccatggcgagtgacctcgtgaacctccccggcatctctgcccgcgtgacgttt
gaggtcggcaagcccttccagccgcaccagcaactgctggccgtgctgccgcccatgtca
tacttgtccatgcccaaggcctactggtctttgctacgcagcccgagtagcccacttgcc
aagtacttgccagagcacatcgtcattgaccgcgaaggcgcgcgtgcgccgtgggaggga
attgtgctcattccattcatcgacgagcgcacgctgctcgccgcttacgagtctgtgcag
caaaacgtcagtcctgaggacgccgcgaacaacgtaaatgggccgccgctgcggttccgc
tatgacggcaagatgacgccgtacgagctggaggatcagatgttcggctctctccggaac
gtcttcgtgaggcgcgagacgtacgcgtttcctcccatcgacaagtttatcccacagctg
tgccccggcgtgcacgtcggcacgcagcagcttgagggtttcagcaccctgcagtcgaag
cgcgacctcatccagacgatcttcgaggccggagtcgtgacgatctttggccgtcccacc
aagaacgacagcctcatcctgcagatgcgcgacttcttcaaggccaaatcgatcgaccag
gtggcaacgctcgtcggcaaggaggtactcgtcggcttcccgcattacaagcgcgcccgt
gtcgcctgcgtgaaggatgtgcacaagtgcatcactgccttatacagcaaggagggcacc
ttcagcggcaccgaggagcacaagaacaaccgcgacgagtcggctgctttcctgagggag
gcggaaacgcacgcgcgttttatgaagtcacagctgggcctcgccgtggagcaggtccac
gttcttgtgtacgtgcaccgctttaatggaatgcaagtgacgcgcaaaggccgcattgag
cggcacttttcgaccacctggacgtgctacccaatccatcttatctgcaccctggagagc
atcgacatgagggaggacagccgctacgtcgagcgctaccgcagcgaaggggacagcgca
ttcggtgcccgttgcgtctacattggcccgcagcccaagtcaaagaagtcgcaggtggac
gtgtacggctgctgcggcacagttttgacgactggccagcacgacacggcgacgcagcag
ggcgatcagctgacagtgcgcctcaaggtgtttcaggagccgctgcggctgccggaggaa
ctgctgcagttcgctgcgctgcgcaactggacagcgctgccgcaggtggcggccagtctc
gacattttaccgcacaccctcacgagcatctgcagctccctcgtcacatcaccgcagttt
ggctctcgcgagctagggctgtgcctaaagttctccgggcggtgcattgccaaggttggg
tatgcgaagctggtccagcacaacttcaacccatggtacgtggggaacaaggacatcttc
tctcgcatggaaaaggacacggaggacatcggttaccatttggagatgggcgagaagggc
gacttcgcgggcaattcgagcaacaatcgtggtggtagcggcacgtggtacttctcccgc
gacgcgcaggagctgatccacgactacgtgaagcggttccgtccactcatccagtacatc
gaggcaggtggcgtaaactcacgcagccttgagccacagcagtttctgacgggaaagtgg
cgcgacaaggacgcggccgaggtgctaacagatattgagacgttcttgatcgagtcaggg
ctgcgcgaaacgccgatgattacggctacggaggaggcctttccgcagcagctgctcgag
cagctcgagatgtcgctgcaggagcagcagagccgcagcttcaaggagctctcgcttcgg
caggtgagccgcaaccagctttactttcctgtcacttacagcagtagcggccatctcgtg
ccgcttccgctgccgaaggagcaaaccttctctctgggctcgcgggtcacgaactgccgc
gccacgggcactgttcccttcggcatgcagggcacgatcgtgcgcctgctggccagcggc
agggaggctgaggtcgtgtatgatacccccttcacaggaggcactcgacttgatggccgc
ctcaaggacactcgcgccgccatcaccaagctgtcggcgcttctcgtgctcaagtcgacg
gatgcaccgcaaccacagcccgaagcccaagcccagccgcagtcgcagcctgacatgagg
gccgcttcaaccgcctctacggacgggtcagcgaggttgagggagctcgaattcctcctg
caggcgaacggcattcacatagacccatcgggcaaatccacggggtctccaccatcgctg
cctgcggcgtttcagaaccccgcgactaccgcggctcgcgctggcctggccgattctggt
gccagccatagcctcaccgccggtgctagtgcaagcgttgtgccgcggccgcgcagtgcg
gctgcaccggagcagacgccggcgtcagcgacaccaggcaagcgctctacccccgcctcc
gccaccgcccatttgttctccagcgcgtcttcattggcgtcggctacaggagagtcccac
accagtcccgcgagcctcaaaatcacggctgccccggggagcagcgggatcagcctccag
gacttggccaaacacttgcccacctccacctcccagctctcgcccgtcagggtcgcctcg
ccggctagtcacgctccagcgttgactgcggctgcggcaacgacgacaacggcgcctacc
ggcatcaccatccctgcacccaagtctgcacagcagcaccaacactcgccgcagcctgtt
tcgcctccgccacctgcgccagcgactgcagcggcagcgtcggtggggacggcctcgctg
cacccaagcaacgagtcgaaggaggcgtctcctggcttgaccacgtgccccaagccgcgc
agcctgcacgtcatcccgggggacttcctgagtgggcagttcaagatcaagtacacgaac
acaggctcgttgttccgcagctggctcaacactttcacggcggaggcggtgagcaagacc
ctcgccgagcttgaggcaggggagaatgcgaatcccacgtga
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integrated database retrieval system
