Legionella cardiaca: PXX05_09030
Help
Entry
PXX05_09030 CDS
T08869
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lcad
Legionella cardiaca
Pathway
lcad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PXX05_09030 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcad03400
]
PXX05_09030 (ligD)
Enzymes [BR:
lcad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PXX05_09030 (ligD)
DNA repair and recombination proteins [BR:
lcad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PXX05_09030 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
SCRE
Motif
Other DBs
NCBI-ProteinID:
WED42076
LinkDB
All DBs
Position
complement(2119961..2122456)
Genome browser
AA seq
831 aa
AA seq
DB search
MRLDLYHQKRNFKKTPEPKGEIHHDENYSFVIQKHAASHLHYDFRLELGGVLKSWAIPKG
PCLDPKVKRLAMHVEDHPVEYGAFEGIIPKGEYGGGTVMLWDEGTWESLDDDPEKAYEKG
HLRFQLRAKKLQGRWDLIRFHKEEKSWFLIKYKDEFAKSLSDYDITVEKPNSVVSKQSLD
EIAENYETVWSSKKGLKKIASPTQKKKTLNKLLPADLEESPFPQRVSPQLATLVDKPPVG
ADWLHEVKFDGYRIVAFKNGKSIRLMSRNHIEWTEKFKNIVNALEGLPIERAVFDGEVVL
LDENHRSNFQLLQNAMKGDKEYPFIYYIFDLIYYDKFSLKTLPLKQRKEILKALFPMTHL
SLKYSDHILGKGKDVFEQSCELGLEGIISKNIHSKYESRRSKSWVKVKCIKRQEFVIGGY
SKPKKSRQYFGSLFLGVFNENKELVYCGNVGTGFTEASLKEVFAELEKHVLKENPFNSLP
PDSKNATWVKPKLVAEIEFSEWTSDGRLRHPSFKGLRKDKKSTLITREEQLPIKKIVTET
AKSQKPSISNPDKIFYKQDKITKQDLFNYYDEISSFILPFIINRPLTLVRCPNGYEKCFY
QKHYYKATPKSLCALPIKNVSDGKVEEYIYLKDKEGLLSLVQMGVLEIHPWGSRIEKIEY
PDIITFDLDPAPDVLWKEVVKAAFEIKKHLEAFHLTCFVKTTGGKGLHIVIPIQPEYDWP
EVKNFTEVFVHFLEKTDPKTYVSNMAKSKRKGKIFVDYLRNQRGATAISAYSTRARLHAP
VATPLDWDELTEDIQDTFYTINTLPERLNKVSDPWKEFWTIKQSLHLNELD
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgagattggatttatatcaccaaaaaagaaactttaagaaaacaccggaaccgaagggt
gaaattcatcacgatgaaaattattcttttgttattcaaaaacatgctgcaagccatctt
cattatgattttcgccttgaacttggtggtgtacttaaaagttgggctattcctaaagga
ccatgtttagatccaaaagtaaaacgattggcaatgcatgttgaagatcatcctgttgaa
tatggggcttttgaaggcattatccctaaaggagaatatgggggtggtactgtcatgctg
tgggatgaaggaacgtgggaatccttggacgatgatccagaaaaagcttatgaaaaaggg
cacttgcgctttcaacttcgagctaaaaaattgcagggacggtgggatctgattcgtttt
cataaagaagaaaaatcgtggtttttgattaaatataaggatgaatttgccaaatcttta
agtgattatgatattactgttgaaaaaccaaatagtgttgtgtcaaagcaatctctggat
gagatagctgaaaattatgaaactgtttggagtagtaaaaaaggattgaaaaaaattgcc
agcccgacacaaaagaaaaaaacacttaataaattgctacctgcagatcttgaagaaagc
cctttcccacaacgtgtttcaccgcagttggctacactcgttgataaaccaccagtaggt
gctgactggctgcacgaagttaaatttgatggttatcggatcgttgcattcaaaaacggt
aagtcaatacgcttaatgtcgcgcaatcatattgaatggacagaaaaatttaaaaatatt
gtcaatgcgcttgaaggactacccattgaacgagcagtatttgacggcgaagtggttcta
ttggatgaaaatcatcgatctaattttcaactactgcaaaatgctatgaaaggagataag
gaatatccctttatttattatatttttgatcttatttattatgataaatttagtctgaaa
accttacctttaaaacagcgtaaagaaatcctgaaagcactattcccaatgacacattta
agtcttaagtacagtgatcatatccttggtaaagggaaggatgtttttgaacaatcctgt
gaactagggctagagggcattatctctaaaaacattcatagcaagtatgaatcaaggcgc
tcaaaatcctgggttaaagtaaaatgcattaaacgtcaggaattcgttattggtggctat
tcaaaacctaaaaaatcccggcaatatttcggatcgctgttcctgggtgtctttaatgag
aacaaagagctggtttattgcggtaatgtaggaacgggttttacagaggcttcattaaaa
gaggtttttgcagaactagaaaagcatgttcttaaagaaaatccttttaattctcttcct
ccggatagcaaaaatgcaacctgggtaaaaccgaaattagttgctgaaattgagtttagt
gaatggacatcagatgggagattaaggcatccaagctttaaaggtttaagaaaagataaa
aaatcgactttaattaccagagaagaacaactgcccataaaaaaaattgtgacagagact
gcaaaatctcagaaaccttccatttcaaatcctgataaaattttttataagcaagataag
attaccaagcaggatttgttcaattactatgatgaaatcagttcttttattttacccttt
attataaatcgtcctctaacattagtgcgttgtcctaatggttatgaaaagtgtttttat
caaaaacattattataaggctactccaaagtctttatgcgccttgccaattaaaaatgtg
tctgatggaaaggtggaagaatatatttatttaaaggataaggaggggttactaagtctt
gtgcaaatgggggtgttggaaattcatccgtggggaagtcgaattgaaaaaattgaatac
cctgacataattaccttcgatttagatcccgcgcctgatgttttgtggaaagaggttgtt
aaggcggcttttgaaattaaaaaacatttagaggcatttcatctaacctgttttgtaaaa
acaacaggaggcaaggggttgcacattgtgatacccatacaaccagaatatgattggcca
gaggtaaaaaattttaccgaagtatttgtccactttttagagaaaacagatcccaagact
tatgtaagcaatatggctaaatccaaaagaaagggtaaaatatttgtcgattatttgcga
aatcaacgtggagctacggccattagcgcctattcaacgcgggcaagattacatgcaccg
gtcgcaacccctcttgattgggatgagttaacagaagatattcaagacacgttttatact
attaacaccctgcctgaaagactaaataaagtaagtgatccctggaaagaattctggaca
attaaacaatcattgcatttaaatgaattggattaa
DBGET
integrated database retrieval system
