Lysinibacillus capsici: ICJ70_11400
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Entry
ICJ70_11400 CDS
T08448
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ICJ70_11400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcap03400
]
ICJ70_11400
Enzymes [BR:
lcap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ICJ70_11400
DNA repair and recombination proteins [BR:
lcap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ICJ70_11400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UNT57593
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Position
2274006..2275823
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AA seq
605 aa
AA seq
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MKPMLLSETNDIPSGDEWLFETKYDGFRCLLVWDEEPKLISRNGRQLNHLFPEILAFCQQ
ISASIQTFLPLTLDGELVYLRNHYKSDFTVVQKRGRMQNQDVIQEHAHLFPFHYLAFDVL
TLKGESLQNHYLKTRKEQLVKLATKFKWPSVNYENPTPIQVIHGSEEHESLWQSIKLYNG
EGIVAKKKTSKWLENIRSNHWLKIKNWRYVTVIVTQYDHSNSYFHGAVFENNQLREVVTF
KHGMTEEEHQTLVKFFQTNGLRKKQLWVLEPSICVDIACIDFDGSKLREPRFHAFRLEKS
PEECHWLHMQRQLYPIPESVAITHPDKPVWPKMGITKDQYLFYLQNISSYLMPFLKDRPL
TLIRYPHGAPGESFYQKSRPEKIPNFMATAVMDDIDYIVCNNLETLLWLGNQLALELHIP
FQTHHSQYPTEIVFDLDPPSVQDFSLAVSGALDLKNIIDYFQLQSFVKTSGGKGLQLYIP
LPANTFTYEEVRIFTEFVCRFLCEQKPNLYTIERLKKNRHEKLYLDYVQHAEGKTIIAPY
STRGNEMGLVATPLLWEEVNENLKPTLFTIPFVMERMKKMSNPFQLFREVGEQQNFQAVL
DQLKE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttttatcggaaacaaacgatattcctagtggagatgaatggctattt
gaaacgaaatatgatggttttcgctgcttattagtttgggatgaggagccgaagctcatt
agtagaaatgggcgacaattaaatcacctgtttcccgaaattttagctttttgtcagcaa
atatctgcatccatccaaacctttttacccctaaccttagatggtgagttagtttattta
cgcaatcattataaaagcgattttaccgttgttcaaaagagggggagaatgcaaaatcaa
gacgtgattcaggagcacgctcatttgtttccttttcactatctagcatttgatgtttta
acccttaaaggagaatctctccaaaaccactatttaaaaacgcgtaaggagcaattggtc
aagcttgctacgaagttcaaatggccaagcgttaactatgagaacccaacccctatccaa
gtcatacatggtagtgaggaacatgagagcttatggcagtccatcaagctttacaatgga
gaaggcattgttgctaagaagaaaacaagtaaatggcttgaaaacatacgatcaaatcat
tggttaaagataaaaaattggcgttatgtcacagtcattgtcacacaatatgaccatagc
aatagttattttcatggtgcagtttttgagaacaatcaattacgagaagttgttacgttt
aagcatggtatgacagaggaagagcatcaaacacttgtcaaattctttcagactaatgga
ctgcgtaaaaagcagttatgggtacttgagccttctatttgtgttgatattgcctgtatt
gattttgatggtagtaagcttcgggaacctagatttcatgcctttcgattagagaagtca
cctgaggaatgtcattggctgcatatgcaacgtcaactgtatcctatccctgaatcagtt
gctatcacacatccagacaagcctgtatggccaaaaatgggtattacaaaggatcaatac
ttgttctatttgcaaaatatctcgtcctatttaatgccatttctaaaggatcgccctcta
acgctaatacgctatccacatggtgctccaggtgaaagtttttatcaaaaaagtaggcca
gagaaaatacctaattttatggcaacagctgtgatggatgatattgattatatcgtgtgt
aataacttggaaacgttattgtggcttggaaatcagctggcattagagctccacattcca
tttcaaacacatcattctcaatacccgacagaaatcgttttcgacttagatcctccctca
gtacaagatttttcattagccgtttcaggagcacttgatttaaagaacattattgattat
tttcagctacagtcctttgtcaaaacatcaggtggaaaaggtttacagctatatattcct
ttaccagcaaatacatttacttatgaagaggtacgtatatttacagaattcgtttgtcgc
tttttatgtgagcaaaagccaaatttatatacaattgagcgtttaaagaagaatcgtcat
gaaaaattatatttagattatgtgcagcatgcagagggcaagaccatcattgccccgtat
tccactcgtggcaatgaaatgggtttagtagccacaccgcttctgtgggaggaggttaat
gaaaacctaaaacccacactttttacgattccttttgtcatggagcgcatgaaaaaaatg
agcaatccctttcaattatttcgtgaagtaggggagcaacaaaattttcaagcagttcta
gatcaattaaaggaatga
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