Lysobacter caseinilyticus: LYSCAS_02980
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Entry
LYSCAS_02980 CDS
T07541
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcas
Lysobacter caseinilyticus
Pathway
lcas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LYSCAS_02980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcas03400
]
LYSCAS_02980 (mfd)
Enzymes [BR:
lcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LYSCAS_02980 (mfd)
DNA repair and recombination proteins [BR:
lcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LYSCAS_02980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
RecG_dom3_C
LcrG
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCT91274
LinkDB
All DBs
Position
296406..299882
Genome browser
AA seq
1158 aa
AA seq
DB search
MTESISPPLPRSGHARAWWRAPASPSGLAWAIAQAARVHDGLVLAIAKDNHGAHQLESDL
RTLLAQDTSIPVLPFPDWETLPYDQFSPHPDIVSQRLAALHRLPTLKRGILVVPVQTLQQ
RLAPLRYVVGNTFDVRVGQTLDLDAEKQRLIAAGYRNVPQVFDPGDFAVRGGLLDVYPMG
ADEPYRVELFDDAIDSIRAFDPESQRSLDKVDAVQLLPGREVPLDEVATKRAMQALRDRF
DIDTRRSALFQDLKAGAAPAGIEYYLPLFFDATATLFDYLGKTALPIVTDGALACAEAFW
AQTAERYEQRRHDIERPLLPPAELYLSPQALREALNAIPRVDVVGGEEAKAAQAQSLGTQ
PAPDVPLVGRDSEAAAALKSFLSTYPGRVLIAADSAGRREALLDVLHAANLHPDVIPDWA
TFNGDGAKFAIAVAPFEDGFALDADVTGGAPLVVLTERQLFPDRASQPRRRKRAGREPEQ
IIRDLGELTEGAPIVHEDHGVGRYRGLVTLEAGGTPGEYLEIEYAKGDRLYVPVAQLDRI
SRYSGASPETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQAKRQARAGLALQVDRAM
YEPFAATFPFEETPDQHAAIEAVIRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFVAAAAG
KQVAVLVPTTLLAEQHYRNFRDRFADWPLRVEVLSRFKSTKEIKGELEKLAEGKIDVIVG
THRLLQGDVRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAG
LRDLSIIATPPAHRLAVQTFVTPWDGAMLREAHQRELARGGQVYFLHNDVETIGRMQRDL
QELVPEARIGIAHGQMPERELERVMLDFHKQRFNVLLCTTIIESGIDIPNANTIVMNRAD
KFGLAQLHQLRGRVGRSHHRAYAYLVVPDNRSITSDARKRLEAIASMDELGAGFTLATHD
LEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDEDPNFEHRGADVVLNV
PALIPDDYLPDVHARLTLYKRISSARNADELRDLQVEMIDRFGLLPDAAKHLFAIAELKL
DATRIGIRKLDLGPTGGRLQFESKPDVDPMTVIQMIQKQPQHYAMDGPDKLRLKLDLPDA
AARVQAARGLLVALRRAA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatcgatttcgccgcccctgccccgttccggccacgcacgcgcctggtggcgc
gcgcccgcgtctccgtcgggcctggcttgggcgattgcgcaggcggcacgcgtgcacgac
ggcctggtgctggcgatcgcgaaggacaaccacggcgcgcaccagctggaatccgacctg
cgcacgctcctcgcgcaggacacgtcgattcccgtgctgcccttccccgattgggaaacg
ctgccgtacgaccagttcagcccgcacccggacatcgtgtcgcagcgcctcgccgcgttg
caccgcctgcccacgctcaagcgcggcatcctcgtcgtgccggtgcagacgctgcagcaa
cgcctcgcgccgctgcgctacgtggtgggcaatacgttcgacgtgcgcgtgggccagacg
ctcgatctcgatgccgaaaagcagcgcctgattgccgccggctaccgcaacgtgccacag
gtgttcgatcccggcgatttcgccgtgcgcggcggtttgctcgacgtgtatccgatgggc
gccgacgaaccgtatcgcgtcgaactgttcgacgatgcgatcgattcgatccgcgcgttc
gatccggaatcccagcgctcgctcgacaaggtcgatgccgtgcagctgttgcccggtcgc
gaagtcccgctcgacgaggtcgccaccaagcgcgcgatgcaggccttgcgcgaccgcttc
gacatcgacacgcggcgcagtgcgctgttccaggacctgaaggcgggcgcggcgccggcc
ggcatcgagtactacctgccgctgttcttcgacgccaccgcgacgctgttcgattacctc
ggcaagaccgccttgccgatcgtcaccgatggcgcgctcgcgtgtgccgaagcgttctgg
gcgcagaccgcggagcgctacgaacaacgccgccacgacatcgaacgcccgctgctgccg
ccggccgagctgtacctctcgccgcaggctttgcgcgaagccttgaacgcgatcccgcgc
gtcgacgtggtgggcggcgaagaagcgaaggccgcgcaggcgcagtcgctcggcacgcaa
cccgcgccggacgtcccgctggtcggccgcgacagtgaagccgcggccgcgctgaagtcg
ttcctgtcgacctatccggggcgcgtgctgatcgccgccgattctgcgggccggcgcgaa
gcgttgctcgatgtgttgcacgcggcgaacctgcatccggatgtcatcccggattgggcc
acgttcaacggcgacggcgcgaagttcgccatcgccgtcgcgccgttcgaggacggcttc
gccctggacgccgatgtcaccggcggtgccccactcgtcgtcctcaccgaacgccagctc
ttccccgatcgcgcatcgcaaccgcgccgccgcaagcgcgccggccgcgaacccgaacag
atcatccgcgacctcggcgaactcaccgaaggcgcaccgatcgtccacgaagaccacggc
gtcggccggtaccgcggcctggtcacgctggaagccggcggcacgcccggcgaatacctc
gagatcgaatacgcgaagggcgaccgcctctatgtccccgtcgcgcagctggaccgcatc
tcgcgctactccggcgcttcgccggaaaccgcgccgctgcattcgctcggcggcgagcaa
tggacgaaggccaagcgcaaggccgcggaaaaagtgcgcgacgtcgccgccgaactcctg
gagatccaggccaagcgccaagcgcgcgctgggctggccctgcaggtggatcgcgcgatg
tacgaaccgttcgcggcgacgttcccgttcgaggaaacgccggaccagcacgccgcgatc
gaagccgtcatccgcgacctcggttcttctcaaccgatggaccgcgtggtgtgcggcgac
gtgggcttcggcaagacggaagtcgccgtgcgcgccgcgttcgtcgccgctgccgcgggc
aagcaggtcgcggtgctggtgccgaccacgctgctcgccgaacagcactaccgcaatttc
cgcgaccgcttcgccgactggccgctgcgcgtggaagtgctgtcgcgcttcaagagcacg
aaggaaatcaagggcgagctggagaagctggccgaaggcaagatcgacgtcatcgtgggc
acgcatcgcctgctgcagggcgacgtgcggttcaaggacctcggcctggtcatcgtcgac
gaagaacagcgcttcggcgtgcgccagaaggaagcactgaaggcgctgcgcgccaacgtg
cacctgctcacgctgaccgccacgcccatcccgcgcacgctcaacatggcgatggccggc
ctgcgggatctctccatcatcgccacgccgccggcgcatcgcctcgcggtgcagaccttc
gtgacgccgtgggacggcgcgatgctgcgcgaagcgcaccagcgcgaactcgcgcgcggc
ggccaggtgtacttcctgcacaacgacgtcgagaccatcggccgcatgcagcgcgatttg
caggaactcgtgcccgaggcccgcatcggcatcgcccacggccagatgcccgagcgcgaa
ctggaacgcgtgatgctcgacttccacaagcagcgcttcaacgtgctgctgtgcacgacg
atcatcgaatccggcatcgacatccccaacgccaacaccatcgtgatgaaccgcgccgac
aagttcggcctggcgcagctgcaccagctgcgcggccgcgtcgggcgttcgcaccatcgc
gcgtatgcgtacctggtggtgccggacaaccgcagcatcaccagcgatgcgcgcaagcgc
ctggaagcgatcgcctcgatggacgagctgggcgcgggcttcacgctcgccacgcatgac
ctcgagatccgcggcgccggcgaactgctcggcgaagaccagagcggccagatggccgaa
gtcggattcagcctctacaccgagctgctggagcgcgcggtgcgttcgatcaagcaaggc
aagctgccggacgaggatccgaacttcgaacatcgcggcgccgacgtggtgctcaacgtg
cccgcgctgatccccgacgattatttgccggacgtgcacgcgcgcctgacgctgtacaag
cgcatcagcagcgcgcgcaacgcggacgagctgcgcgacctgcaggtggagatgatcgat
cgcttcggcctgctgcccgatgcggccaagcacctgttcgcgatcgccgagctcaagctc
gacgctacgcgcatcggcatccgcaagctcgacctcggccccaccggcggccgcctgcag
ttcgagtcgaagcccgacgtcgacccgatgaccgtcatccagatgatccagaagcaaccg
cagcactacgcgatggatgggcccgacaagctgcgcctgaagctcgacctgcccgacgcc
gccgcgcgcgtgcaggccgcgcgcgggttgctggtggcgctgcgccgtgcggcctga
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