Lysobacter caseinilyticus: LYSCAS_13230
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Entry
LYSCAS_13230 CDS
T07541
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
lcas
Lysobacter caseinilyticus
Pathway
lcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LYSCAS_13230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcas03021
]
LYSCAS_13230
03019 Messenger RNA biogenesis [BR:
lcas03019
]
LYSCAS_13230
Transcription machinery [BR:
lcas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LYSCAS_13230
Messenger RNA biogenesis [BR:
lcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LYSCAS_13230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
Spore_III_AA
TFIIA
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCT92299
LinkDB
All DBs
Position
1371301..1373058
Genome browser
AA seq
585 aa
AA seq
DB search
MSDQNSDSGAVAEKRVRKPRAAAASTDAAAPAASAPPAESAPVAPPQAPQAPQQQPQAPQ
QQQPQQHQQQRQQHQNQNQNQQQHQNQNQNPQQQGGGQQADGGDQGDDGGDGQGRFNNNR
RDRFRNRRDRQRERYRDDGMPQDQGANEQQHFPQRPMPSVPEGFPQYSLSDLKRMPAPKL
LEIAEQLNISEGVARARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYL
AGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSVVDTINGEPLEASKNKVLF
ENLTPLFPRRRFTLERGNGSTEDISGRILDLMAPQGKGQRALIVSPPKAGKTMMLQQVAT
AITTNHPDVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRL
VEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSL
TIIATALVETGSKMDEVIYEEFKGTGNSEVLLSRRITEKRVYPAIDINRSGTRREDLLIE
PEMLQKIWILRKLLHPMDEIAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgaccagaattccgactccggcgccgtcgccgagaagcgcgtgcgcaagccgcgt
gcagccgccgccagcaccgatgcggccgcgcccgccgccagcgcaccgccggccgaaagc
gcgcccgtcgcgccgccgcaggccccgcaggcgccgcagcagcaaccgcaggcgccgcag
cagcaacagccgcagcagcaccagcagcagcgccagcagcaccagaaccagaaccagaac
cagcagcaacaccagaaccagaaccagaatccccagcagcagggcggcggccagcaggcc
gacggcggcgaccagggcgatgacggcggcgatggccagggccgcttcaacaacaaccgc
cgcgaccgcttccgcaaccgccgagaccgccagcgcgagcgttaccgcgacgacggcatg
ccgcaggaccagggcgcgaacgaacagcagcacttcccgcagcgcccgatgccgagcgtg
ccggaaggcttcccgcagtactccctcagcgacctcaagcgcatgcctgcgccgaagctg
ctggagatcgccgaacagctgaacatctccgaaggcgtggcccgcgcccgcaagcaggac
gtgatcttcgcgctgctgaaggtgctcacgcgccacggtgaaggcgtcgccgcagacggc
gtgctcgaaatcctgccggacggcttcggcttcctccgcgcggccgaagccagctacctg
gccggcccggacgacacgtacatctcgccgagccagatccgccgcttcaacctgcgcacg
ggcgatcacctgtccggccgcatccgcttcccgaaggatggcgagcgctacttcgcgctg
tcggtggtcgacacgatcaacggcgagccgctggaagcctcgaagaacaaggtgctgttc
gagaacctcaccccgctgttcccgcgccgccgcttcacgctggagcgcggcaacggcagc
accgaggacatctcgggccgcatcctcgacctgatggcgccgcagggcaaaggccagcgc
gcactgatcgtttcgccgccgaaggcgggcaagacgatgatgctgcagcaggtcgccacc
gcgatcaccaccaaccacccggacgtgcacctgatcgtgctgctcatcgacgagcgcccg
gaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaggtcatctcctccacgttcgac
gaacccgccgcgcgccacgtgcaggtcgccgaaatggtgatcgagcgcgccaagcgcctg
gtcgagcacaagaaggatgtcgtcatcctgctcgactccatcacccgcctggcccgcgcg
tacaacaacgtcgtcccgagctccggcaaggtgctcaccggcggcgtggacgccaacgcg
ctgcaccgcccgaagcgtttcttcggcgcggcgcgcaacgtggaagaaggcggctcgctg
accatcatcgccaccgcgctggtcgaaaccggcagcaagatggacgaggtgatctacgaa
gagttcaagggcaccggcaactccgaagtgctcctgagccgccgcatcaccgaaaagcgc
gtctacccggcgatcgacatcaaccgttcgggcacgcgccgcgaagacctcctcatcgag
ccggaaatgctccagaagatctggatcctccggaagctcctgcacccgatggacgagatc
gccgcgatggaattcctgctcgacaagatgaagaacacgaagtccaacgacgagttcttc
ggctcgatgaagcgctga
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integrated database retrieval system
