Lemur catta (Ring-tailed lemur): 123623880
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Entry
123623880 CDS
T08326
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03030
DNA replication
lcat03410
Base excision repair
lcat03420
Nucleotide excision repair
lcat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123623880 (LIG1)
03410 Base excision repair
123623880 (LIG1)
03420 Nucleotide excision repair
123623880 (LIG1)
03430 Mismatch repair
123623880 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcat03032
]
123623880 (LIG1)
03400 DNA repair and recombination proteins [BR:
lcat03400
]
123623880 (LIG1)
Enzymes [BR:
lcat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123623880 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
123623880 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
123623880 (LIG1)
DNA replication proteins [BR:
lcat03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
123623880 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
123623880 (LIG1)
DNA repair and recombination proteins [BR:
lcat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
123623880 (LIG1)
NER (nucleotide excision repair)
Other NER factors
123623880 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
123623880 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Presenilin
PucR
Mitofilin
Motif
Other DBs
NCBI-GeneID:
123623880
NCBI-ProteinID:
XP_045387237
LinkDB
All DBs
Position
19:24458157..24497057
Genome browser
AA seq
917 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKTALKEWNGVVPDNDSPVKRPGRKA
TRVLGSEGEEDDDEALTPPKGKKPAPDCLKVSPPSPAPSPGNSLSLSDPSPMGSSPPGIL
KRRTARKQLPKRTIQDVLEEQSEDKDREAKKRKEEEEAESPKESLTKAEEATKKEAEEED
QPTIPPSSLETSKAEKPKESGSEPEVAVQQEAQEDETKPPPRAPKTLSNFFTPRKPAVKK
EVKEEGPGTPGKEDSKEPLDPTSYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEV
SARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNSLGPPQQGLELGVGDGVLLKAVAQAT
GRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFAKFLDIARLTGSASTAK
KMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPAVVD
AGKGKTAEARKTWLEEQGMTLKQTFCEVPDLDRIVPVLLEHGLEHLPEHCRLSPGIPLKP
MLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDII
SRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDL
IYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIDQIAEFLEQSVKDSCEGL
MVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAS
YDKDSEELQAICKLGTGFSDEELEGHHQQLQALVLPAPRSYVRIDGAVAPDHWLDPSTVW
EVKCADLSLSPVYPAARGLVDSEKGISLRFPRFIRVREDKQPEEATSSAQVASLYRKQSQ
IQNQQGEDSDSNLEDMY
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcgaagaagccc
gagaaggaggcatccaacagcagcagagagacggagccccctccaaaaacggcactgaag
gagtggaacggagtggtgcccgataacgactctccagtgaagaggccggggaggaaggcg
acccgggtcttgggcagcgaaggggaggaggacgacgatgaagccctgactcctcccaaa
ggaaagaaacctgccccagactgcctgaaagtatcccctcctagtcctgccccatctcct
gggaacagcctttccctctctgacccctctcccatgggcagctccccaccggggatcctg
aagcgccgcacagctcggaagcagctcccgaaacggacaattcaggatgtcctggaagag
cagagtgaggacaaggaccgagaagccaagaagaggaaggaggaggaagaagcagagagc
ccgaaagaaagcctgacaaaggctgaagaggcaacaaagaaagaagcagaagaggaggac
cagcccacaatacctcccagttccctagagacctccaaagcagagaagccgaaggaaagc
ggttcagagcccgaggtggccgtgcagcaggaagcacaggaggacgagactaagcctcct
cccagagcccccaagacgctcagcaacttcttcacaccccggaagccagcagtcaaaaaa
gaagtgaaagaagagggaccaggcactccagggaaggaggacagcaaggaacccctggac
ccaaccagctacaatcctgccaagaacaactaccatcccgtcgaagatgcctgctggaaa
ccaggccagaaggtcccttatctggccgtggcccggacatttgagaagatcgaggaggtt
tctgctcggctccggatggtggagacactgagcaacttgctgcgctccgtggtggccctg
tcacccccagacctcctccctgtgctctacctcagcctcaacagccttgggccaccccag
cagggcctggagctcggggtcggtgacggcgtccttctcaaggcagtggcccaggccaca
ggtcggcagctggagtcggtccgggctgaggcggctgagaagggtgacgtggggctggtg
gccgagaacagtcgcagcacccagaggctcatgttgccgccacccccactcactgcctcg
ggggtcttcgccaagttcctagacatcgccaggctcacgggcagtgcttccacagccaag
aagatggacatcatcaaaggcctcttcgttgcctgccgccactcggaagcccgattcatc
gccaggtccctgagcggacggctgcgcctggggctggcagagcagtcggtgctggccgcc
ctcgcccaggctgtgagcctcacacccccaggccaaggattccccccagctgtggtggat
gctgggaagggcaagacagcagaggccaggaagacgtggctggaggagcagggcatgact
ctgaagcagacgttctgtgaggtgcctgacctggaccgaattgtccccgtgctgctggag
catggcctggaacatctcccggagcactgcaggctgagcccaggcatccccctgaagcca
atgttggcccatcccactcggggtgtcagcgaggtcctgaaacgcttcgaggaggcagct
ttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttctggagggcggg
gaggtgaagattttcagcaggaaccaggaagataacaccggaaagtacccggacatcatc
agccgcatccccaagattaaactcccatctgtcacatcctttatcctggacactgaagcc
gtggcttgggaccgggaaaagaagcagattcagccattccaagtgcttaccactcgcaaa
cgcaaggaggtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttcgacctc
atctacctcaatggagagtccctggtacgtgagcccctttcccgacgtcggcagctgctc
cgggagaacttcgtggagacggagggtgaatttgtcttcgctacctccctggacaccaag
gacattgaccagatcgccgagtttctggagcaatccgtgaaagactcctgcgaggggctg
atggtgaagaccctggacgtcgatgccacctatgagatcgccaagagatcgcacaactgg
ctcaagctgaagaaggactacctcgacggcgtgggcgacaccctggaccttgtggtgatc
ggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctggcctcc
tacgacaaggacagtgaggagctgcaggcgatatgcaagctcggaactggcttcagcgac
gaggagctggaggggcatcaccagcagctccaggccctggtgctgcccgcgccccgctcc
tacgtgcgcatagatggcgccgtggcccccgaccactggctggaccccagcaccgtgtgg
gaggtgaagtgcgcagatctctccctctcccccgtctaccctgctgcccggggcctggtg
gacagtgagaaagggatctcccttcgcttccctcggtttattcgagtccgggaagacaag
cagccggaggaggccaccagcagtgcccaggtggcctctctgtaccggaagcagagtcag
attcagaaccagcagggcgaggactcggactcgaacctggaagatatgtactaa
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