Lates calcarifer (barramundi perch): 108877585
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Entry
108877585 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: RNA binding protein fox-1 homolog 2-like
KO
K14946
RNA binding protein fox-1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108877585
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108877585
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Gene cluster
GFIT
Motif
Pfam:
Fox-1_C
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
108877585
NCBI-ProteinID:
XP_018523184
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All DBs
Position
LG11:17261169..17306054
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AA seq
461 aa
AA seq
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MLMSTDVASIMLPVSRGIMDRERDIDPAAGPHANAAGGPAAVRGMKRGDPEPDAQTAAAL
TDLAGAECKRPRIDGTGSVVGDIGQNNEPLNPGFHGYPPHSQGSQDSTGGQEGLVAPPFT
AFPPPPPPQNGLPGTEFGPGAMFGAGGQGTAEVGAGANGATPTTTTNNNNGKTDETSQGE
AGVQCGTGGTGAGGSAGDSTEAKGTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF
NERGSKGFGFVTFENSADAEKAREKLHGTLVEGRKIEVNNATARVMTNKKMVSPYPNGEA
LSTLPYAGWKLSPMVGAVYGPELYAVPGFPYPSAAAAATTAAAAFRGAHLRGRGRPVYSA
VRAAVPQPAIPAYPGVVYQDGFYGAADLYGGYLLLLPPPAYRYAQPAAVTGATAAAAAYS
DSYGRVYTTDPYHALAPAAAAYGVGAMASLYRAGYSRFAPY
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgtcgaccgacgttgcatctataatgctacccgttagtcggggaataatggac
cgggaaagagacattgatccagcagccggaccccatgccaacgcggccgggggtccagca
gctgtccgggggatgaagcgaggagacccggagcccgacgctcagacagccgctgccctg
actgacttagccggggcggagtgcaaaagaccaaggatagacgggaccgggagtgttgtc
ggtgacattggacagaacaatgagcctttaaaccctggtttccatggatacccacctcac
agtcagggctctcaggattcgacaggaggacaggagggcctggtggccccaccctttaca
gcattcccccctccacccccgcctcaaaacgggctcccggggacagagtttggccccggg
gccatgtttggtgctgggggccaaggaacagcagaggtaggggctggcgctaatggagcc
actcctactaccaccaccaacaacaacaatggaaagacagacgagacatcccagggggag
gcgggtgtacagtgcggtacaggaggcacaggagcggggggctcggcaggagactccaca
gaggccaaaggcacccccaaacgcctccacgtctcaaacattcccttccgcttccgggac
ccagatctcaggcagatgttcgggcaatttggcaagattctggatgtagagattattttc
aatgagaggggttcaaagggttttggctttgtgacatttgagaacagcgcagatgcagag
aaagcccgggaaaagctccacggcacgttggtggaaggtcgtaagattgaggtgaataac
gccaccgccagggtgatgactaacaagaaaatggtcagcccttaccctaacggagaggct
ctcagcacgctgccttatgcggggtggaaattgagtcctatggtgggggccgtgtacgga
ccggagctctacgcagtcccagggtttccctacccttcagcagctgcagcagccacaaca
gcagcagcagcgtttcgcggtgcccacctcaggggccgaggtcggccagtctacagcgct
gtgcgggctgctgtgcctcagcctgccatccctgcctaccctggcgtggtgtatcaggat
gggttttacggagctgccgacttatatggaggctacctgctgctgctgccgccgcctgcc
tatcgctacgcccagcccgcagccgtaaccggagcaaccgccgcagctgccgcctacagt
gacagttatggccgggtgtacactacagatccataccacgctttagctccagctgctgct
gcttacggagtgggagccatggccagtttatatcgggcaggatacagtaggtttgctcct
tactaa
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