Lates calcarifer (barramundi perch): 108878181
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Entry
108878181 CDS
T04895
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108878181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878181
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108878181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_16
TPR_11
TPR_8
TPR_17
TPR_12
TPR_9
ANAPC3
PPTA
ChAPs
HemY_N
TPR_15
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
108878181
NCBI-ProteinID:
XP_018524108
UniProt:
A0A4W6G991
LinkDB
All DBs
Position
LG13:complement(13505671..13519662)
Genome browser
AA seq
1570 aa
AA seq
DB search
MSGKEVKSALKSAKEAIKNKEFKEALKQCKAVLKLDKKNYNAWVFIGLAASELEQPDQSQ
SAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKVELPNVYQKLVELYASSDKKKCYEVIK
KLTEIYQSDKEYLKLAKVWQQLIQLKKEEAVDKKELLELWQQLTQLLSDCLNEEEQDNEI
QQHLISAFENAMVLMDPVPGEKHMKMSTDYVRCLSKLPQEEAKMKEACESMLSHYPSQSY
PLEVLGSHYLKTGILNEDTVSCFSRLLDLAPNCGLGHLGLGTKALQEGRYKDAIKDLAQG
LKKTSCNTGWYSLAEAQFKMHRYSDSATSCSQGLMICGSGDRELRVKLLRLKLETLVRSG
GEKAADQALETFSQIPDAEKDPVLVALKGRAYLNKGQIDQALKVSSELVASNPNLAQGLA
LKGLVHLAEGQQQLAEQSLLKAATKNPNCGEYYFLLGQLYWGMGEETRKDRSKAHTHLLK
AAKLDPHLGSAFRYLGHYYREIANDRGRARGCYKKAFELDNEDAESGAASVDLSMEQEDM
ETALATLESVIEKATPGSAKWAWMRRGLYYLKVGEHQQATADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIQNLFKAVELRPDLSCLWKLLGDACT
AVSTVSPNRAQVLVPAPLAGLDPNSQSHMLNQAQTLKVGERCYAHALKLMSEAPSLWYDL
GLNYYRQASLPSPTEGDQNSQSLVLEKAQQCLKKAIMMDSGNHSYWNALGVISMNKGLEN
YALAQHCFIKSIQVEPNNVVAWTNLGTLYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDTELYRYNIVQMNAI
SAAQVALSKYTERIQSDPEAFIMLGYLNEHLQLKRQALQAYQRAVELLQSTSSTEELAFA
VGSYGRALCTSGQWEEAVHAYKSTPLQELSDLAGVALAYCRAGLIPESISAYERALAVAS
SEKEKAYILTALALLQHRQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHGDATLAA
AALTELLKQGSASGSVVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
VVPQYYPRKANGGAMAGHVACLSSMTQGKRALLYSGVNQLASGRHSGEDRHRNALKTLQR
AVLLCPDDPAAWAGLMAACHTENTSCYLSGSAPCRQGMEKILMSVVSEKVRSVEEIERPL
AQTLEGWVLQQAVTGLVMGGQLEEAEALCSQVLNVSPEHPAVMLALRQVQCQRLLVANGG
TVLPDSVMEQLNNTVMMNPTNLGAWHWLAEVYRSQGLLVQAVMAYRQSLQLASQLGLHSS
QVTSLLRLALLALGPCMADVPGNDWKDLVLEATTEVLKLGSFPMALLFQALLQYVTKMAA
RETRRLLERLVYVSSQDFPVTVVQVASWYLLRHLHAKNDDELINVLLERAKMNRDQRLLK
FHSLLASSSS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtaaagaagtgaaatcagctctgaaaagtgccaaagaggccatcaagaataaa
gagttcaaagaagctctgaaacaatgcaaggctgttttgaaacttgacaagaagaattac
aatgcatgggtattcatcggcttggcagccagtgaacttgaacaaccagaccagtctcag
tcagcctataaaaaggcagtggagctggagcctgagcagctcttagcatggcagggctta
gccaatctttatgagaagacagaccagtgggattttaaagttgagctgcctaatgtttat
cagaagcttgttgagctgtatgccagctcagacaaaaagaaatgttatgaggtgatcaaa
aagctcacagaaatctatcagtctgacaaagaatatttaaagttggcaaaggtttggcag
cagctcattcagctgaagaaggaagaagctgtggacaagaaagagttactagagctatgg
caacagctgacacagctcctctcagactgccttaatgaggaagagcaggacaatgaaatt
caacaacatttaatctcagcatttgagaatgccatggttctcatggaccccgtcccagga
gagaaacacatgaagatgtcaacggactatgttagatgtctctctaaactgccacaagaa
gaagctaaaatgaaggaggcatgtgagtccatgctgtcccactaccccagccaaagttat
cctcttgaggtccttggttctcattaccttaaaacaggtatcctgaatgaggatacagtc
agctgcttctctcggctcctcgatctggcccctaattgtgggttaggtcacttaggtctg
ggcaccaaagcgcttcaggaaggaagatataaagatgccattaaggaccttgcacaaggg
ttgaagaaaacgagctgcaacacaggatggtacagtctggctgaagctcagtttaaaatg
cacagatactcagacagtgctacgtcatgctcccaaggtctgatgatatgtggttctgga
gacagggagctgagggtcaaactgctcagattgaagttagagactttagtcagaagtgga
ggagagaaggctgcagaccaggctttggagacattttcacagattccagatgctgaaaag
gacccagttctagtagcccttaaaggacgtgcataccttaacaaaggacaaattgatcaa
gcacttaaggtgtcatcagagctagtggcctccaacccaaacctggcccaggggttagca
cttaaaggactggtacacttagctgaaggccagcagcagctggcagagcagagtcttcta
aaggcagctactaagaacccaaactgtggagagtattattttttgctgggacaactctac
tggggcatgggagaagagacgcgtaaagaccggagcaaagcccatacacacttgctgaag
gctgcaaagttagatccacaccttggcagtgcattccgctaccttggccattattaccgg
gagattgcaaatgatcgtggccgtgcacgaggctgctataagaaggcctttgaattggac
aacgaggatgctgaatctggagctgcctctgtggatctcagtatggagcaggaggatatg
gaaactgccttagcaacacttgagtcagtgattgagaaagccactccaggctcagctaag
tgggcctggatgagacgaggcctgtattacctgaaggttggagagcatcaacaggccaca
gctgatctgcaggcagctcttagagcagacccggaggactgggtttgttgggagtgttta
ggtgaggcctacctaaaccgccggagcttcacagcagctctgaaggcctttggtaaggct
catcagcttcagccctcctccatctacagtgtttaccaagctgctgcaatcaaacagacc
ctgggcaagttcaaagaggcggttgcagagtacttgcagatcacagcacagcaggactat
gttcctgctcttaaaggtcttggggagtgccagctgtctttagcaaaaagtttaatggaa
gactgcagagatgggggagccattgacctcattcagcaagccatacagaacctcttcaaa
gctgtggagcttcgtccagacctgtcctgtttgtggaagctgctgggagatgcatgtacc
gctgtcagcactgtgtcgccaaaccgagcacaggttcttgtgcctgccccgctggctggt
ttagaccccaactcacagagccatatgcttaaccaggcccagacactcaaagttggtgag
aggtgctatgctcatgctttaaagctgatgtctgaggcccccagtctttggtatgaccta
ggactcaactattaccgccaggctagcctaccctcccctacagagggagaccagaactcc
caatctctggtcctagagaaggctcagcagtgtttgaaaaaggccatcatgatggacagt
gggaaccacagctactggaatgccctgggagtgatttccatgaacaaaggtcttgagaac
tatgctctggctcaacattgcttcatcaagtccatacaagttgagccaaataatgttgtt
gcctggacaaaccttggtaccctgtatttgaagaaggacaatatagagcttgcacacgag
gccttcaagattgcccagtctttggagccgctgtatgtcaactgctggattggacaggca
ctgatagcagagagagtgggaagctatgacaccatggatcttttcaggcacaccactgaa
ctcagcacacatatggagggagttaaaggttatgcatactgggtatgttccaccctgctg
gataagagcaacagagacactgaactgtaccgctacaacatagtccagatgaacgccatc
tctgctgctcaggtggcactcagcaagtacacagagaggatccagtctgaccctgaagcc
ttcattatgcttggctacctaaatgagcatctgcagctgaagaggcaggccttacaggct
taccaaagagctgttgaactgctacagtccacgtcctcaacagaagaactagcttttgct
gtgggcagctatggccgtgctttgtgcacctcaggccagtgggaggaggcagtgcatgct
tataagtccactccactgcaggagctcagtgatctggctggggtggctctggcctactgc
agggcaggactcatcccagagagcatcagtgcctatgaacgtgccttggctgtggcttcc
agtgagaaggagaaagcttacatcttaacagctctggccctactgcagcaccgacagggc
aatctagactcagccaagactctgctgtttaaatgctcgatgttaaaggagccaatctca
gagtctctgttgtgtctatgtgccctggggttggtccatggtgatgctacactagctgct
gctgccctgactgagctgctgaagcaaggttcagcctctgggagtgttgtagagcagcga
tgtttactcacctgcaccttgctggccctgcagggcaactacagtgccgtgcaaagagag
gcttccagagctgtacacagtaatcctggaaacccttctctgtgggccctgctatccaga
gtggtaccacaatactacccacggaaggcaaatggtggagcaatggctggtcatgttgcc
tgtctttccagtatgacccaaggaaagagggcgctgttgtacagtggagtaaaccagctg
gctagtggaagacactctggagaagacaggcataggaatgcactgaagactttgcagaga
gctgtgctgctctgtcccgatgatccagcagcgtgggcgggattaatggctgcctgtcac
acagaaaacacatcctgttatctttcaggttctgctccttgcagacaaggaatggagaaa
atcctcatgtcagtggtttctgagaaagtgcgtagtgtggaggagatagagcgccctcta
gcccagactctagaaggctgggtactacaacaggcagtgactggtctcgtgatggggggg
cagctggaggaggcagaagctctgtgctcacaggtgctgaatgtttccccagaacaccca
gcagtgatgctggcactgagacaggtgcagtgtcagcgcctccttgtggccaatggtggt
actgtcctcccagactctgtgatggagcagctgaacaacacagtgatgatgaatcccacc
aaccttggggcttggcattggctggctgaggtgtatcgtagtcagggtctgctggtccag
gcagtcatggcttacaggcagagtctgcagcttgcctcacagctcggcctgcacagcagt
caggttaccagcctgctccgactagccctactagctctaggaccctgtatggcagatgtc
ccaggaaacgactggaaggaccttgtattagaggccactactgaggttttgaagctgggt
tcattccccatggccctcctcttccaggccctgctccagtatgtgaccaagatggcagcg
agggaaacaaggcgtttgttggagaggctggtgtacgtttcctctcaggacttcccagtg
acggtggtgcaggtggccagctggtacctcctcagacacttgcatgccaaaaatgacgac
gagctgataaatgtccttctggaacgagccaaaatgaatagagatcagagacttctgaag
tttcattcactgcttgcctcttcttcatcctga
DBGET
integrated database retrieval system
