Lates calcarifer (barramundi perch): 108878302
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Entry
108878302 CDS
T04895
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108878302 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108878302 (kdm2ab)
04121 Ubiquitin system [BR:
lcf04121
]
108878302 (kdm2ab)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108878302 (kdm2ab)
Enzymes [BR:
lcf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108878302 (kdm2ab)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108878302 (kdm2ab)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
108878302 (kdm2ab)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108878302 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108878302 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
LRR_6
Cupin_8
LRR_8
C1_1
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
108878302
NCBI-ProteinID:
XP_018524373
UniProt:
A0A4W6DHW3
LinkDB
All DBs
Position
LG8:12984841..12998469
Genome browser
AA seq
1312 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCNRFNSDLIKLMEGKDF
TFEYIQKEGLRDPIVFKRADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTTVWYHILRGGKVFWLIPPTPQNLE
TYENWVLSGKQGDIFLGDKCHDCQRIELKQGYTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGIG
LTRADLENSDHTGNGTSNGVDSNTENTEAILKEEEIKEEEEGAAAPVTTPQHTLTPFELE
GLWNLLGKLEELPAHKKCVPAGIRNAAALLEDMRAVLKQHASDNPKISYNGEPIVKWPKR
PSWYQPPTPPPTVLHRPRLGPSLHKPLGQRSTKRSSISALRRRRVRCKRCAACCRKECGT
CQYCHDMRKFGGPGRMKKSCIMRQCLAPALPNTARCAICGEGESDESNPSTHSLMECSVC
SQIAHRQCIKEPGEGKINKDLPSCWECPKCYQGKGSASESSSDEESGESEGSSSMPQSKL
AYQEGEGVRRGRRSRPQSRPTAPPPSQKLLLQHQQNRKRASALELRLKKRIKLERSKLLM
KQSSLDRSPRLLGSRVLSRLRSPTSRLSQGRGRGHTWVSGTPYHSSPGGTGSFQQQQSSL
GLVLEPKGEARRGRGRGVRLRGGGAGRGIRGGRDHGDLEEEEDEEEDEEEESEDSSSSST
NNSSSSSDEEEERGQNSGRGGDKENQPQSRRGGRAAKDGEEEGSEMANQNCADEEDEEEM
EQDSQMGDKDSTYLKVTLQRPTRAKRDPSAIVPKLEAIAPQTATSTIHNQARALVRPPIR
NRGPCSDQHSSRHTPPHTRSGHAYTHTTHPERLDASKRPRPNRPAKLSNGASCSSSSELP
HLRIPLSALQEGGSEADRESGGSGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLD
KRLWARIDLSVKRTITPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPGLKDLMLAG
CSWSSISALCSSGCPLLRSLDLRYADGVKDSQIRDLVSPPGCDNRSQLRTMQCLRLAGLD
ISDSTLRLVIRHMPHLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLTELNLGGCSKLTDA
CLKYLRRLSCISLLDLRGCKGVSRKACEAFISELSVNTLYCLSDDKLIQRIS
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcatacacggtacagcaagcgcctgcgtacaggtacgcggcgccgctac
caggatgacgggatctcagatgatgagattgaagggaaacgaatgtttgatttggatgaa
aagttgcagtgcaacaggtttaactccgatttgatcaaactcatggagggtaaagatttc
acatttgaatacatccaaaaggaagggctcagggaccccattgtctttaagagagctgat
ggtcttggcatacaaatgccagaccctgatttcagtgtgagtgatgtcaagttgtttgtt
ggtagtcgacgcattgtagatgtgatggatgtgaacacccagaagggaatcgagatgtca
atggctcagtggcgacgctactatgagacgccaccgtcagaaagagaaaaactctataat
gtcatcagcctggagttcagccacaccaggctggagaatctggttaaacggccagcttcg
gtggaccttattgactgggtggacaacatgtggccccgccatctcaaggagagacagaga
gactccaccaatgccatcatagacatgcattatcccaaagtacagaaatactgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcaccactgtctggtac
cacatcctgcgaggaggaaaggtgttctggttgattccacccacaccacagaacctggag
acgtatgagaactgggttttatcaggaaaacagggagacatcttcttgggtgacaagtgt
catgactgtcagaggatagaactcaagcagggctacaccttcataatcccatcaggatgg
atccatgctgtgtacaccccagaggacacgttagtgtttggggggaattttctccacagc
tttaacatccccatgcagctcaacatctacagcattgaggatcgcacacgggtgccagca
aagttccgctaccctttctactatgagatgtgctggtatgtgctggagagatacctctac
tgcttgaccaacatctctcacctcacccctgagttccaaaaatactcccttggcatagga
ctgacccgggctgatcttgaaaattctgatcacaccgggaacggcacgtccaatggagtt
gacagcaacactgaaaacacagaggccatactaaaggaagaagaaatcaaagaagaagaa
gaaggagcagcagctccagtcaccacacctcagcacacgctgaccccgttcgagctggag
ggactgtggaacctcttggggaaactggaggagctgccggcccataaaaagtgtgtccct
gcgggcatcaggaacgccgcagccctgctcgaggacatgagggctgttctgaagcagcat
gccagtgataaccccaagatatcctacaatggagagcctattgtcaagtggcccaaaagg
ccatcatggtaccagccccccactccccctcccactgtccttcaccgtcctcgcttgggc
cctagcctccacaagcccctgggtcagaggtccaccaagcgctcctccatctctgccctg
aggcgcaggcgggtgaggtgcaaacgttgcgccgcttgctgcaggaaggagtgcggcacc
tgccagtactgccacgacatgaggaagttcggtgggcctggacgcatgaaaaagagctgc
atcatgagacagtgtctagcgcctgcgttgccaaacacagctcgatgtgccatatgcggt
gagggcgaatcagatgaatcaaatccgagcactcactcactcatggagtgctccgtctgc
tcgcagattgcccatcgtcaatgcattaaggaacctggtgaggggaaaatcaataaggat
ttgcccagctgctgggaatgtcctaaatgttatcaaggcaaaggttcagcatcagagtct
tccagcgacgaggaaagcggagagtcggagggctcgtcctccatgccgcaatccaaactc
gcataccaggaaggcgaaggagtgagacgagggagacgtagcagaccccagtcccgaccc
acagcaccaccaccttctcagaaactgttactgcagcatcaacagaatcgcaaaagagca
agtgcactggagctcagacttaagaagaggataaaactggagcgcagcaaactcttaatg
aaacagtcgtctctagatcgttctccaaggctgctgggttccagggtgctgtcccggctg
cgctctccaaccagcagactatctcagggcagaggccggggccacacctgggtgagtggc
accccttaccacagctctccaggaggaacggggtccttccagcagcagcagtcttccctc
ggtctggtactcgagcccaagggagaggcccgcagagggaggggaagaggggtgaggctg
cggggaggaggagcaggaagaggaatcaggggtggcagagaccatggagacttggaggag
gaggaggacgaggaggaggacgaggaggaggagagcgaggacagcagcagcagcagcacc
aacaacagcagcagcagcagcgatgaggaagaggagagggggcagaacagtgggagggga
ggggacaaagagaaccagccgcagtcgaggcgaggaggacgagcagccaaagacggagaa
gaggaagggagcgagatggccaaccaaaactgtgcggatgaggaagatgaggaagagatg
gagcaggacagtcaaatgggggacaaggacagcacatatcttaaagtgacactgcaaagg
ccgaccagggccaagcgggacccatcagccattgtccccaaattagaggccatcgcccct
caaactgctacttccacaatacacaaccaggccagagccctcgtcagacccccaatcaga
aatcgtggcccctgttccgatcagcactctagtaggcacacacccccacacactcgcagt
ggacacgcatacactcacaccacccacccagagaggctggacgcctctaaaagaccaagg
ccaaacaggccagctaaactgagcaacggcgcctcctgttcttcatcctctgagcttcca
catctccgcatccctctgtccgccctgcaggaaggagggagcgaggcagacagggagagc
ggaggaagcgggccaggttgtgagagggaggtgtgggtgtctgtcttccgctacttaagt
cgagcagatctctgcgtctgcatggctgtctgcaagaactggtacaaatggtgtttagac
aagcggctttgggcgcggattgacctgagcgtcaagcgcaccatcactcctcaggcccta
actggcatcataaagagacagcccgtcacactcgatctctcctggactaacatctctaaa
aagcagctcaactggctcgttggccgcttgcctgggttgaaggatctgatgctggcaggt
tgttcctggtcgtccatttcagctctctgctcctctggttgccctctcctccgttctctt
gacctgcggtacgcagacggggtcaaagactctcagatcagggatctagtcagccctcca
ggctgtgacaatcgtagtcagttgcggaccatgcagtgtttgcgactggcaggcctggac
atcagcgactccactctgcgcttggtgatccgccatatgccccacttaacaaaactggac
ctctcccactgcaatagcctcaccgaccactccatcaacctgctgactgcagtgggctca
tccacccgaaacacgctcacagaactcaacctgggaggctgcagtaaactgacagatgcg
tgtctaaagtatctccgccgcctctcctgcatctcactgcttgacctgcgaggctgtaaa
ggcgtctcgcgcaaggcgtgcgaggccttcatctccgagctgtcagtcaacacactctac
tgcctatcagacgataaactgatccagaggatatcctaa
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integrated database retrieval system
