Lates calcarifer (barramundi perch): 108878580
Help
Entry
108878580 CDS
T04895
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108878580 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
108878580 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108878580 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108878580 (gtf2h2)
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108878580 (gtf2h2)
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108878580 (gtf2h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
DZR
IBR
Motif
Other DBs
NCBI-GeneID:
108878580
NCBI-ProteinID:
XP_018524943
UniProt:
A0A4W6FP73
LinkDB
All DBs
Position
LG13:22820446..22828114
Genome browser
AA seq
393 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILFQSKRKRVIESHEQVRLGMMRH
LYVVIDCSRSMEDQDLKPNRLTSTLKLMEAFVDEYFDQNPISQVGIITTKNKRAEKLTDL
SGNPKKHIAALKKAVDTVCVGEPSLYNSLNQALQSLKHMPGHTSREILIILSSLTTCDPA
NIYELIKTLKSLKVRVSVIGLSAEVRVCTVLTRETGGLYHVILDESHFKELLMMHVKPPP
ASSSSECSLIRMGFPQHTVAALTDQDAKPSFSMSHLDSSSGPGLSLGGYFCPQCHAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLQAFVESPLEELQGDRYCQACQGELKDKSIFTC
TSCHSVFCVECDVFIHDTLHCCPCCIHSQVTPL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacctgagagagccaagcgatgggaagggggctatgagaggacatgggag
gtcctgaaggaggatgaatctggctcacttaaagccacagtggaagagatcctgttccag
tccaaaaggaaaagggtgatagaaagtcatgaacaagtgaggcttggaatgatgcgtcac
ctctatgtggtgatagactgttcaagaagtatggaggaccaggacttgaaaccaaaccgc
ctaacctctactctaaagctgatggaagcttttgtcgatgagtatttcgaccaaaacccc
atcagtcaggtgggcatcattaccacaaagaataaaagggctgagaagttgactgatctg
tcaggaaatccaaagaaacacatcgctgctctgaaaaaagcagtggacactgtgtgtgtc
ggagagccgtccctgtacaactctctcaaccaggccttacaatccctcaagcacatgcct
ggacatacgagccgggagatcctgataatcctcagtagcctcactacgtgtgatccagcc
aacatttatgagctgatcaagaccctgaagtctctaaaggtgcgggtgtcagtcatcggt
ctgtcagcagaggtccgggtgtgtacagtcttgacaagggagactggcggcttgtaccac
gttatcctggatgagagtcacttcaaagagcttctgatgatgcatgtcaaacctcctcca
gccagctcctcatcagaatgctctttaatacgcatgggttttcctcagcacactgtcgct
gctctgactgaccaggatgccaagccttcattcagcatgtctcatctggacagcagcagt
ggtccaggtctgtctctgggagggtacttttgtccgcagtgccacgccaagtacacagag
cttcctgtggagtgtaaagtctgtggtttgactttggtgtcagccccccatctcgccaga
tccttccaccacctctttcccctccaagcctttgtagagagtcctttggaggagctccaa
ggagacaggtactgtcaagcgtgtcaaggggagctaaaggataaaagtattttcacctgc
acatcatgccacagtgtgttttgtgtggagtgtgatgtcttcatccatgatacactccac
tgctgcccctgctgtatccacagtcaggtcaccccattgtga
DBGET
integrated database retrieval system
