Lates calcarifer (barramundi perch): 108878948
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Entry
108878948 CDS
T04895
Name
(RefSeq) sex comb on midleg-like protein 2 isoform X1
KO
K11465
sex comb on midleg-like protein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108878948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108878948
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
PRC1.4 specific proteins
108878948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBT
SLED
RBR
SAM_1
SAM_2
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
108878948
NCBI-ProteinID:
XP_018525535
UniProt:
A0A4W6E1R2
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All DBs
Position
LG17:5445923..5458723
Genome browser
AA seq
700 aa
AA seq
DB search
MGKTPLKDQKDGKKEKPGRTVLPTGTTPATTKDAFNWEEYLRETSSIPAPPSCFRQARVP
PSNDFKVGMKLEAHDPRNSTSVCIATVMGLTGVRLRLRLDGSDNSNDFWRLVDSSDIQPI
GTCEKNGDMLQPPLGFRMNASSWPMFLLRTLNGAEMAPATAFKKEPPRPPQNSFKPGMKL
EAVDKKNPYLICPATIGEVKGDEVFIMFDGWRGAFDYWCKYDSRDIFPVGWCTLTKHSLQ
PPGNSVTLPKTLQTLPASPSKPSRRSMQSPYRLPNPLPPLPVRKGVRGRRPKSETIALLK
AVAEAAAAQNGTVPETTQLVPRPHKKRGPKPGSKRKSKILQGQTQLPSIQVPQESPPSLN
SVVSTVCVYVNKHGNCGPHLDRKQMQHLPDHFGPGPVNAVLQQVVQSCIDCAYQPKVLLS
ALQTHSGGGEVVRVRTDVGVRVVKLPSASSASFVLRFLETMCRHLQCDNLFSSQPFSHYT
AYDRNKSVKEEALDAPSLARGSKRSLSGVSPSYAAPLSPKHLRTEAHPSEAETLPHEENG
LIKEQRYMDSASNSMTPRPQTVRSSSEYHSQASSLYHPGNGTPMRRLSSNPAEHGSSQPL
RRVEAASSTTGPEALVSERESQQLPSKNPSSWSIEEVMQFVRDADPTALAPHAELFRKHE
IDGKALMLLRSDMIMKYMGLKLGPALKLCHHIERLKQGKL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaactccgctaaaagatcaaaaagatggcaaaaaagagaagccaggaagaaca
gttctaccaacaggtacaacccctgcaacaactaaagatgctttcaactgggaggaatat
ctaagagaaacatcatctatacctgctccaccaagctgttttcgtcaggctagagtccca
ccctccaatgacttcaaagtgggaatgaagcttgaagcccatgacccacgcaattccact
tcagtttgtattgccacagtgatgggtttaactggggttcgtctgcgtctccgtctggat
ggaagtgacaacagcaatgacttctggagacttgtagactcttctgatatccagcccatt
ggcacctgtgagaagaatggagacatgctgcagccgccactaggatttcggatgaatgca
tcgtcatggcccatgtttctgttgagaaccttaaatggagcagagatggcaccagcaaca
gcctttaaaaaggaacctccaaggcccccccagaacagctttaagccaggcatgaaactg
gaagctgtggataagaagaacccatacctcatctgccctgccaccattggggaagttaag
ggtgatgaggtcttcatcatgtttgatgggtggcggggtgcctttgattactggtgcaag
tatgactcccgggacatcttccctgtgggctggtgcaccctcaccaagcacagcctccag
ccaccaggcaacagtgttacccttccaaagaccctgcagactctccctgcatcaccctcc
aaacccagcaggcgttccatgcagtctccctacagactccccaaccctctgccccctctg
cctgtcaggaagggggtgcgaggccgaaggcccaagagcgagaccatagctctactcaaa
gctgtggctgaagcagccgctgcccaaaatggcactgtacctgaaaccacacagctagta
ccccggccccacaaaaagagaggacccaaacctggaagcaagagaaagtccaagattctc
cagggtcagacacagctgcccagcatccaggttccacaggaaagccctcccagtctcaac
tctgtggtttcaacagtgtgtgtgtatgtgaataagcatgggaactgtggtccccacctg
gacaggaagcagatgcagcatctgccagaccactttggtccggggccagtaaatgctgtg
cttcagcaggtggtccagtcgtgtatagactgtgcataccagcctaaagtcctgctcagc
gctctgcagactcattcaggaggaggagaggttgtcagagtgaggacagatgttggagtt
cgtgtggtcaagctaccctcagcttccagcgcttcctttgtgctgcggttcctggagact
atgtgtcgtcacctgcagtgtgacaacctattcagcagccaaccgtttagccactacaca
gcttatgacaggaacaagtcagtgaaagaagaggcgttggatgctccttctctggctcgg
ggtagtaaacgcagtctctctggagtctctccatcatatgcagcccctctgtctcctaaa
catctacggactgaggctcacccttcagaagcagagactctgccccacgaggagaatggc
ctaataaaggagcagcgctacatggactcagcctccaactccatgaccccgcgccctcag
acagttcggagttcctcagagtaccactctcaggccagcagcctctaccatcctggcaac
ggcacacccatgcgccgcctctcctccaacccagcagagcatggttcttcacagcctctc
agacgagttgaagcagccagctccaccacaggccctgaggctctggtgtctgagcgggag
agtcagcagctgcccagtaaaaacccctcctcctggtccatcgaagaggtgatgcagttt
gtaagggatgctgaccccacagcattagctccacatgccgaactattcagaaaacacgaa
attgatgggaaagccctgatgctgctccggagcgacatgatcatgaagtacatgggtcta
aagctggggcctgcactgaagttatgtcaccacatagagaggctgaaacaaggcaaactg
taa
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