Lates calcarifer (barramundi perch): 108880941
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Entry
108880941 CDS
T04895
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108880941
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108880941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
U-box
zf-RING_2
zf-RING_5
zf-RING_6
CCDC47
LMBR1
Fib_alpha
Gp58
FapA
UvrD-helicase
ACCA
Motif
Other DBs
NCBI-GeneID:
108880941
NCBI-ProteinID:
XP_018528199
UniProt:
A0A4W6C8G7
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Position
LG4:complement(2895292..2897242)
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AA seq
558 aa
AA seq
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MAQKGVQLDQETFSCSICLDLLKDPVAIPCGHSYCMNCIKTHWDEEDEKEIHSCPHCRQT
FTPRPVLMKNTMLAALVEELKKTGLQAAPADHCYAGPEDVACDFCTGRKLKAVKSCLVCL
VSYCEKHLQPHYESPSFEKHKLVDPSKKLQENICSHHNEVMKMFCRTDQQCICYLCSVDE
HKGHDTVSAAAERTERQRELELSRLKIQQRIQDREKDVKELQQEVEAINRSADKTVEDSE
KMFTELIRLMEKRRSDVKQQIRSQQKTEVSRVKELQEKLQQEITELKRKDAELKQLSHTE
DHNQFLHNYPSLSQLSESTDSSSIKIRPLRYFEDVTAAVSELRDKLQDILTEKWTNISLT
LTEVDVLLSQPEPKTRAEFLRYSQEITLDPNTANTRLLLSEGNRRATLTCKHQSYSNHPD
RFTKWCQVLSRESLTGRCYWEVEWRGEGVYVAVTYKNISRTGSLNECIFGYNDKSWALNC
SQNSYSFLYNYIQTPVSGPQSSRVGVYLDHRAGILSFYSVSETMTLLHRVQTTFTQPLYA
GLWFGWSDGATAEFRKLK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaaaggagttcagctggaccaggaaaccttctcctgttcgatctgtctggat
ctactgaaggatccagtggctattccctgtggacacagctactgtatgaactgtattaaa
acccactgggatgaagaggatgagaaggaaatccacagctgccctcactgcagacagacc
ttcacaccgaggcctgtcctgatgaaaaacaccatgttagcagctttagtggaggagctg
aagaagactggactccaagctgctcctgctgatcactgctatgctggacctgaagatgtg
gcctgtgatttctgcactggaaggaaactgaaagctgtcaagtcctgtttggtttgtctg
gtctcttactgtgagaaacacctgcagcctcattatgaatctccatcatttgagaaacac
aagctggtggacccctccaagaagctccaggagaacatctgctctcatcacaatgaggtg
atgaagatgttctgtcgtactgatcagcagtgtatctgttatctctgctctgtggatgaa
cataaaggccacgacacagtctcagctgcagcagaaaggactgagaggcagagagagctg
gagctgagtcgactaaaaatccagcagagaatccaggacagagagaaagatgtgaaggag
cttcaacaggaggtggaggctatcaatcgctctgctgataaaacagtggaggacagtgag
aagatgttcactgagctgatccgtctgatggagaaaagaaggtctgatgtgaagcagcag
atcagatcccagcagaaaactgaagtgagtcgagtcaaagagcttcaggagaagctgcag
caggagatcactgagctgaagaggaaagatgctgagctgaagcagctctcacacacagag
gatcacaaccagtttctacacaactacccctcactgtcacaactcagtgaatctacagac
tcatccagcatcaagatccgtcctctgaggtactttgaggatgtgacagcagctgtgtca
gagctcagagataaactacaggacattctgacagagaaatggacaaacatctcactgaca
ctgactgaagtggatgttttactgtcacaaccagagcccaagaccagagctgagttctta
agatattcacaggaaatcacactggatccaaacactgcaaacacacgtctgttattatct
gagggaaacagaagagcaacgctaacatgtaaacatcagtcttattctaatcacccagac
agattcactaaatggtgtcaggtcctgagtagagagagtctgactggacgttgttactgg
gaggtggagtggagaggagaaggagtttatgtagcagttacatacaagaatatcagcaga
acagggagtttgaatgaatgcatatttggatacaatgataaatcttgggcattaaattgt
tcccaaaacagttattcatttttgtacaactatatccaaactccagtctcaggtcctcag
tcctccagagtaggagtgtacctggatcacagagcaggtattctgtccttctacagcgtc
tctgaaaccatgactctcctccacagagtccagaccacattcactcagcctctctatgct
ggactctggtttggctggtctgatggagccactgctgagttccgtaaactcaaatag
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