Lates calcarifer (barramundi perch): 108881298
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Entry
108881298 CDS
T04895
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108881298
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108881298
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108881298
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108881298
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108881298
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108881298
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108881298
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA
zf-UBP_var
zf-UBP
UBA_4
Motif
Other DBs
NCBI-GeneID:
108881298
NCBI-ProteinID:
XP_018528730
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Position
LG17:complement(14162917..14196349)
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AA seq
863 aa
AA seq
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MAADLGELLVPYMPTIRVPRTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKATGAAGGAIPRRRNGKVFLDLELNRDFNGEDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAVLNASSAYKKQEPESWDEEIQVSRHARSLRQLD
NGVRIPPSGWKCQKCEMRENLWLNLTDGAVLCGKWFFDGSGGNGHALEHYRETNYPLAVK
LDTITPDGADVYSFEEEEAVLDPHISEHLSHFGIDMLQMQKRTENGHHTDNNARPRVSEW
EVIQESGMKLKAVYGSGYTGVKNLGNSCYLGTVMQVLFSIPDFQRMYVGNLQRIFDYSPL
DPTQDFATQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEYKVLNWHQQKGISPRMLKALV
SRGHPEFSSNRQQDAHEFLLHIINLVERNSAGSENPSDVFRFLVEERVQCCQTRRVRYTQ
RVDYCIQLPAPIEAATNREELLAYEAKRKDAEENMRAPPEPVRARIPFTACLQAFTEPEN
VPDFWSSALQAKSAGVKTSRFASFPEYLIVQIKKFTFGVDWVPKKLDLAIDVPDFLDLNR
LRATGLQAGEEELPDLMPPIVLPEDTRDNSMSSIDSPEIDEAAVMQLAEMGFPLEACRKA
VYYTGNMGPEMAFNWIIAHMEEPDFAEPLTLPSMIDPGPSTSDSPTGATPLGNSPPEESI
AILTSMGFPRTHSIQALKATNNNLERALDWIFTHPEEEESDALSDMADTEPNDNAFSNAN
SHSDSTLSPDRDTSGPRIKDGPGRYELFAFISHMGASTMSGHYVCHIKKEGRWVIYNDHK
VCLSERPPKDLGYVYFYHRLSSS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacctaggagagctgctggttccgtacatgcccaccatcagagtccccagg
acgggagacagggttttcaagagcgagtgtgccttttctttcgactctccagagtctgag
ggaggcctgtatgtgtgtatgaacacattcctgggcttcggacgagaacatgtggagaga
cattatcgcaaaacaggacagagtgtttacatgcacctcaagcgacatgtcaaagagaaa
gccacaggagctgcaggaggcgccatccccagacgaagaaatgggaaagtgtttctagat
ttagaactaaaccgtgattttaacggagaggactatgaatacgaagacgaggccaagctc
gtcattttcccagaccacttcgagatccccttaccaaatattgaggagttgcccgctctg
gtgaccatcgcctgtgacgcagtgctcaatgcatcatcagcttacaagaagcaggagcct
gaatcctgggatgaggagatccaggtgtctagacatgccaggagcctcagacagctggat
aatggggtcagaatcccacccagcggctggaagtgtcagaagtgcgagatgagagagaac
ctgtggctcaacctgacggatggagcagtgctctgcgggaagtggttctttgatgggagc
gggggtaacggccacgctctggagcactacagagagaccaactaccccctggctgtcaaa
ctggacaccatcaccccagatggagcagacgtctattcatttgaagaggaagaagctgtg
ttggaccctcatatatcagaacacttgtcacacttcggaatagacatgctacagatgcag
aaaagaacagagaatgggcaccacacagacaataacgcgcggccgcgggtcagtgaatgg
gaggtgatccaggagtcaggcatgaagctgaaggcggtgtacggttctggttacacaggc
gtcaaaaacttgggcaacagctgctacctcggcacagtaatgcaggtcctcttcagcatc
ccagacttccagaggatgtatgtgggtaatcttcagaggatatttgactactcacccctt
gaccccacccaagacttcgccacacaaatggctaaactgggacacggactgctctcaggc
cagtactccaaaccgcccatgaaatctgagctcattgaacaggtgatgaaagaagaatac
aaggtattaaactggcaccagcagaagggcatctcccccaggatgttgaaggccctggtc
agcaggggacacccagagttttcctcaaacagacaacaagatgcccacgagtttcttctg
cacatcatcaacctggtggagaggaacagcgcaggttcagagaatccaagcgacgtcttt
cgcttcctggtggaggaacgagttcagtgctgccagacacgtcgggtgcgttacactcag
cgggttgactactgcatccaactgccagcccccatcgaggctgccaccaaccgagaggag
ctgctggcatacgaggccaagcggaaggatgctgaagagaacatgagggcccctcctgaa
ccggtgagagctcggatccccttcaccgcctgcctgcaggccttcacagagccagagaac
gtcccggacttctggagctcagcgctgcaggccaagtcagctggagtcaaaacttcccgt
tttgcctccttcccagagtatctgattgtgcagattaagaaattcacattcggagttgac
tgggtgccgaagaaactagacttggccatagatgttccagacttcctggatctgaaccgg
ctgcgggccacagggctgcaggcaggtgaagaggagctgcctgacctcatgcccccgatc
gtgctacctgaagataccagagataactcaatgagctccatagactccccagaaatagac
gaggcagcagtaatgcagctggccgagatgggtttcccgctggaggcctgtaggaaggca
gtctactacacaggcaacatgggccctgagatggccttcaactggatcatagcccacatg
gaggaacctgactttgcagaacctctcacactgccctccatgatagatcctggtccctcc
accagtgacagccccacgggtgcaactccgctgggcaactcaccccccgaggagagcatc
gccatcctcacttccatgggcttcccccgcactcacagcatccaggctctcaaagccacg
aacaataacctcgaacgagcactcgactggatctttacccacccggaggaggaggagagc
gacgccctctcagacatggctgacacagagcccaacgacaatgccttctccaacgccaac
tcacacagcgactccacgctgtctccagacagagacacgtcgggcccacgaatcaaagat
ggaccgggacgttatgagctctttgccttcatcagccacatgggagcgtccacaatgtct
ggacattatgtttgtcacattaaaaaggagggaaggtgggtgatctacaacgaccacaaa
gtgtgtttgtcagaaaggcctccaaaagacttgggctacgtctacttttaccatcgactg
tctagcagttaa
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