Lates calcarifer (barramundi perch): 108881900
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Entry
108881900 CDS
T04895
Name
(RefSeq) class I histocompatibility antigen, F10 alpha chain-like isoform X1
KO
K06751
MHC class I antigen
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
lcf04145
Phagosome
lcf04218
Cellular senescence
lcf04514
Cell adhesion molecules
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108881900
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108881900
04145 Phagosome
108881900
09143 Cell growth and death
04218 Cellular senescence
108881900
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108881900
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108881900
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108881900
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108881900
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Antigens
108881900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
Ig_3
TMEM154
Comm
PepSY_TM_like_2
SpoIIIAH
T4SS_pilin
Ig_2
Cadherin_C_2
DUF4834
Motif
Other DBs
NCBI-GeneID:
108881900
NCBI-ProteinID:
XP_018529616
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All DBs
Position
LG3:19612508..19885099
Genome browser
AA seq
393 aa
AA seq
DB search
MKTVIYLVLLGINSAASVIHSLKYFYTGSSHVPNFPEFVSVGSVDEVQMIRYDSSTETAE
PKQDWMKKVTEDNPEYLAGEAEHWSRIQQAFKANIQTAKQRFNQTAGVHIAQRMFGCEWD
NETGEVKGYDQHGYDGEDFIVFDLKTETWIAPKPQAVITKLKWDDNKASIAQWKNYLTQV
CPEWLKKYVNYGRSSLLRTDRPSVSLLQKTPSSPVSCHATGFYPDRAMMFWRKDGEELHE
DVDRGEILPNHDGTFQMSVDLKVSSVSPEDWRRYDCVFQLSGVKEDIITKLDKAEIRTNW
GKTGLRETSNDVTVPITAAVVVVALVLFAVSGFVVYKTKKGKSEKSSQQSETSSHSSDNS
AKGSDKEPDTLSFNYNNNSSTESADSNKPLMKR
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaagactgtgatttatctggttcttctgggaataaacagcgcagcctcagtgattcac
tctctgaagtatttctacactggttcctctcacgtcccaaacttcccagagtttgtgtct
gtcggttcggttgatgaagttcagatgattcgctacgacagcagcacagagacggcagaa
cccaaacaggactggatgaagaaagtcaccgaggataacccagagtacttggcaggtgaa
gctgagcactggagccgtatccagcaggccttcaaagccaacattcagactgcaaagcag
cgcttcaaccaaactgcaggtgttcacatcgcccagaggatgtttggctgtgagtgggac
aatgagactggagaggttaaaggttacgatcaacatggttacgatggagaagacttcata
gtttttgacctgaagacagagacgtggatcgctccaaaaccacaggctgtcatcaccaaa
ctcaagtgggacgataacaaagcttcgatcgctcagtggaagaactacctgacccaggtt
tgtcctgagtggctgaagaagtatgtgaactatgggaggagctctctgctgagaacagat
cgtccctcagtgtctctcctccagaagactccctcttctccagtcagctgccatgctaca
ggtttctaccctgacagagccatgatgttctggaggaaagatggagaggagcttcatgag
gacgtggaccgaggagagatcctccccaaccatgatggaaccttccagatgagtgttgac
ctgaaggtttcatcagtctcacctgaagactggaggaggtacgactgtgtgtttcagctc
tctggtgtgaaggaggacatcatcaccaaactggacaaagcagagatcaggaccaactgg
ggaaaaactggactcagagagacgtccaatgatgtgaccgtccccatcactgctgcagtg
gttgtagttgctctcgtcctctttgctgtcagtggattcgtggtttacaaaacaaagaaa
gggaaatcagagaaatcctctcagcaaagtgagacctcttctcacagttcagataattct
gcaaagggaagtgacaaagagccggacactttgtcatttaactacaataataattcctct
acagaaagtgcagacagcaacaaaccactgatgaaaagatga
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