Lates calcarifer (barramundi perch): 108883645
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Entry
108883645 CDS
T04895
Symbol
clstn2a
Name
(RefSeq) calsyntenin-2
KO
K22660
calsyntenin 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108883645 (clstn2a)
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Cadherin related
108883645 (clstn2a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_2
Laminin_G_3
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
108883645
NCBI-ProteinID:
XP_018532540
UniProt:
A0A4W6F6U9
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Position
LG4:15851636..15989788
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AA seq
949 aa
AA seq
DB search
MQTLGVPFLLFWLIWGHCCALGGKVNKHKPWIETSYHGVITENMDTVLLDPPLVALDKDA
PVPYAGEICAFKIYGQDAPFEAVVLNRTSGEGVLRASSPVDCESQKEYTFIIQAYDCGAG
PSGADWKKSHKAVVHIQVDDVNEFSPVFREPLYKASVTEGKIYDSILQVEAWDQDCSPQY
SQICNYEIVTAGTPFAIDRNGNIRNTERLSYDKQQTYKIMVTAFDCGQKRAKEDVAVHID
VKPVCKPGWQGWNKRVDYEPGTGSKQLFPKMHLETCGGPLSGVRAMVELQTNHIGKGCDR
ETYSEKSLQKLCGAASGSTDLLPAPSPSTNWTVSLLTDSGRDSDLIYRFDGRQAANVPDH
VVPQNLTDQFTIATWMKHGPSPGLRAEKETLLCNSDKTEMNRHHYSLYVHNCRLVFLLRR
DFTQVDTFRPAEFHWKLEQICDKEWHYYVINVEFPAVTLFVDGVTYEPYLVTDDWPIHAS
KIDTQLTVGACWQGGEVATPRFTQYFHGSLSGLTIRPGRIETQKVISCLQACKEGLDINS
LESLAKDIKFHFNPAQSVLVVEGEDVDSINTAMTKVSYINSRQFPTAGLRRLHITTTVQC
FGEDTCLSIPDIKAVVMVLPPSEPRITITGSNRLVRPAGDLRGPLGVAPFKELHITSTVM
KGDSFGGFHRPGVMEVMHNLDYCDILVIGEELNPEKESLEIHHSALLGKHLDATNSTSGI
SIYGVDSMAHYEQALRQVRYRNWRPATLSERRFRLTCSELNGRYTSNEFILEVSVLHHSA
PVEHVNHMAAQPQYMRPVHHPLMIHTFNSHASGAAPPAATVVIVVCIAALVVIVVIGVYR
IHATHQEGSREDEDEVKDPEADWDNSALTITVNPMENIRGAQVLDEEVKEESREDEEEEE
DEEQVGGMTSAESDNSDEDEEEEEEEEREDVKERKQKGKLEWDSSSVTY
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgcagacactcggggtcccttttttgctgttttggcttatctggggccactgctgcgcc
ctcggcggaaaagtgaacaagcacaagccgtggatagagacatcttaccacggtgtgatc
accgagaacatggacacggtactgctggaccctcctctggtagctctagacaaggatgcc
ccggtcccctatgctggggagatttgtgcctttaagatctatggtcaggatgctccattc
gaagcagtggtgttgaatcgcacatctggagagggagtcctgagggccagcagcccagtg
gactgtgagagccagaaagagtacaccttcataatccaggcctacgactgcggggctgga
cccagtggggccgactggaagaaatcccacaaggcggtggttcacatccaggttgatgac
gtcaatgagttcagtcctgtctttcgggagccgttgtacaaggcgtcagtaacagagggc
aagatctatgacagcattttgcaggtggaagcttgggaccaggactgctcacctcaatac
agccagatctgcaactatgaaattgtcactgcagggacaccatttgccatagaccgcaat
ggaaacatcagaaatacggagcgactgagctatgacaagcagcagacctacaagattatg
gtgacggcctttgactgtggtcagaagagagcaaaggaggacgtggctgtgcatattgat
gtcaagcctgtttgcaaacctggatggcaaggctggaacaagcgtgtggactacgagcca
gggactgggagcaagcagctgttccccaagatgcacttggaaacctgtggcggtcccctg
tctggcgtgagggccatggtggagctgcagaccaatcacatcgggaagggctgtgaccgt
gaaacttactctgaaaagtctctgcaaaaactctgcggtgcagcatcaggcagcacagac
ctccttcctgcccccagcccttccacaaactggacggtgtctctgctgactgacagcggg
cgagacagcgacctcatctacaggttcgacgggcgtcaggctgccaacgttccagatcat
gtggtgccccaaaacctgacagaccagttcaccatagcaacctggatgaaacacgggccc
agtccaggactcagagctgagaaggaaaccttactgtgtaactctgacaagaccgagatg
aaccgccaccattactctctgtacgttcacaactgccgcctggtgttcctgctgagaaga
gatttcactcaggtcgacactttcagacctgccgaattccactggaaactggagcagatc
tgtgacaaggaatggcactattatgtgatcaacgtggaatttcctgcagtgacactattt
gtggacggtgtgacctatgaaccctacctggtgacggacgactggccgatccatgcctca
aagattgatacgcagctgactgtgggtgcctgctggcaaggcggtgaggtagcaacccca
aggttcacccagtacttccatggcagcctgtcaggtctgacaatccgaccaggccgcatt
gaaacccagaaggttatctcctgtctgcaggcctgcaaagaaggccttgatataaactcc
cttgaaagcctagctaaggacatcaagttccattttaatcctgcccagtctgtgctggtg
gtggaaggagaggatgtggacagcatcaacacagctatgaccaaagtttcctacatcaac
tctcgccagttccccacagcaggcctccgacggctgcacatcaccaccacagtacagtgt
ttcggagaggacacgtgtctctccatcccagacatcaaggcagtggttatggtgctgccg
cccagtgaaccgagaatcacaattacaggatctaatcgactcgtcaggcctgctggtgac
ctgcggggtccgctgggtgtggcacccttcaaagagcttcacatcaccagcacagtaatg
aagggagacagcttcggtggattccacagaccaggtgtgatggaggtgatgcacaacctg
gactactgtgacatcctggtaattggagaggaactgaatcctgagaaagagagtctggag
attcatcatagtgctttgttgggaaaacacctggatgctaccaactccacctcgggaatt
tcaatatatggtgtggactccatggcccactatgagcaggcactgagacaggtgcgctac
aggaactggcgacctgccaccctcagcgagagaaggttcagactcacctgctccgaactc
aacggacgttacaccagcaacgagttcattttggaggtcagtgttcttcaccactcggca
cctgtggagcatgtcaatcatatggcagcccagcctcagtacatgagacccgtccatcac
ccactcatgatacacactttcaactcacacgcatcaggagcagcacctccagcagccaca
gtagtcatcgtggtttgtatcgccgccctggttgtgattgtggtgatcggagtgtacagg
atccatgccacacatcaggaggggtccagagaggacgaggacgaggtcaaagaccctgag
gcggactgggacaactctgctctcaccatcactgtcaaccccatggagaacataagagga
gctcaggtgctggacgaagaggtaaaagaggagagccgggaggacgaggaagaagaagag
gatgaggaacaggttggaggaatgacaagtgctgagtcagacaacagtgatgaagatgag
gaggaggaagaggaagaagaaagagaagatgtgaaagagaggaagcagaagggaaaactt
gagtgggacagttcctctgtaacatactga
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