Lates calcarifer (barramundi perch): 108886899
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Entry
108886899 CDS
T04895
Symbol
chpfa
Name
(RefSeq) chondroitin sulfate synthase 2
KO
K00747
chondroitin polymerizing factor [EC:
2.4.1.175
2.4.1.226
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
lcf01100
Metabolic pathways
Module
lcf_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
108886899 (chpfa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108886899 (chpfa)
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
108886899 (chpfa)
2.4.1.226 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
108886899 (chpfa)
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108886899 (chpfa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Fringe
Motif
Other DBs
NCBI-GeneID:
108886899
NCBI-ProteinID:
XP_018537536
UniProt:
A0A4W6DJ52
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Position
LG1:complement(12415099..12422804)
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AA seq
766 aa
AA seq
DB search
MRFSAFISVLRSVGPVVIGISLGFTLSLLSVNWTEEACYVDGKEGEDVTLGQDGLLKGAR
KPNSISTLNDVESEEDFEPRIVPYKQVQQSAPKKVFRAKYISTELGMRERLFVGVLTSKN
TINTLGVAVNRTISHHLDSVIFFTGMRNRKVPHGMFVVSHGDERLIWNMFQTIRYILDHY
INEYDWFYFVQDDTYTEADRIKALVDHLSMDRELYMGSPEEFIGGEMEGKYCYGGFGYLL
SRTLLLRLQPFLENCRNDILSARPDEWLGRCIIDYANTNCVSEYEGLQYHHYELGKNADP
SKEQSEHFKRALTVHPVSDPDQMYRLHRYFTEIELQKTYDEIAKLQVEIKNVSVAAFEGN
RSAQWPVGINPPFEPKSRFEVLKWEYFTEEEIYSCIDGSPKCELCGIDRMDVADVIDTAI
GELNKKYKPILHLKKQQLINGYRRFDPIRGMEYTLDLQLEVVNQKGHSRSITKRVHLVRP
LSQIEIIPMPYVTEATRVHIIIPLTLQDRSYVDHFLEVFASNAFETSENTILTFLFIYDP
VEAQQVNQNDIFASVKSQINTYERKYPTVKIPWISVKTETPSQIKFMDIISKKHPVDTLF
FLGSVNTNINSEFLNRCRMNSINNWQVFFPIHFQDYNPDVAYHNQPHPTTVDLVKDAGHF
DRRSFEESCFYNSDYMATRTRMVADVQENEDILETMDIYDMFVKYSGLHVFRAIEPALHQ
QYRYQACNPRLSEDIYHRCVQSNLESLGSRSQLAMLLFEQEQGNST
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagattttcagcgtttatttctgtcctgcggtcggtcggcccggtggtaatcggtatt
tctttagggttcacgttgagtttattgagtgttaactggacggaagaagcgtgctatgta
gacggtaaggagggtgaggatgtgactttaggtcaggatggactgctcaaaggagcccga
aagcccaactccatttcgaccctgaacgatgtggagtccgaggaggattttgaaccaaga
atagtcccatataaacaagtccaacagagtgcaccaaagaaagttttcagggctaaatac
ataagcacagagttggggatgcgagagcgtctgttcgttggggtcctgacatccaaaaac
accattaacaccctgggtgtagctgtcaatcgcaccattagccatcacctggactctgta
atcttcttcaccggcatgcgcaaccgcaaagtccctcacggcatgtttgtggtctctcat
ggagacgagcgactgatatggaacatgtttcagaccatcagatacatcttagatcattac
atcaatgaatatgactggttttactttgtccaagatgacacctacacagaggctgacagg
atcaaagccctggtggatcacctgagtatggatcgagagctttacatgggcagtcctgaa
gagttcataggtggggagatggaagggaagtattgctacggagggtttggatacctcctg
tcacgtaccttgctcctgcgactccagcctttcttggaaaactgtaggaatgacatcctg
agtgccaggcctgatgagtggctcgggagatgcatcattgattatgccaatacaaactgt
gtcagtgaatatgaggggcttcagtaccaccattatgagttgggaaaaaatgctgatcca
agtaaggagcagagtgaacatttcaagagagctctgaccgtccatccagtatctgacccc
gatcagatgtaccggctgcacagatactttactgagattgaactccagaagacttacgat
gagattgctaagctgcaggtggaaataaagaatgtgagtgtggctgcttttgaaggcaac
cgaagcgcccagtggccagtggggatcaatccaccttttgagcccaaatctcggtttgaa
gttctgaaatgggaatactttacagaggaagagatatattcatgtattgatggctctccc
aaatgtgagctgtgtggaattgaccgcatggatgtggctgatgtcattgacacggccata
ggggagctaaacaagaaatacaagcccatcttacacctgaagaagcagcagctgattaat
ggctacaggcgttttgaccccattaggggcatggagtacaccttggaccttcagctggag
gtggttaaccagaagggtcatagccgttccatcaccaagagggttcatctggtgcgacct
ttgagccaaatagagataattcccatgccttatgtcactgaagctacaagggttcacatc
attatacctcttactctgcaggaccggagctatgttgaccatttccttgaagtctttgct
tcaaatgcctttgagacgagtgaaaatactatcctaacatttttgtttatttatgaccca
gtggaggcacagcaggttaaccagaatgatatatttgccagtgtgaagagtcagattaat
acctacgaacgcaaataccccacagtgaaaatcccatggataagtgtcaagacggaaaca
ccatcccagatcaagttcatggacatcatctcaaagaagcacccggttgacacactgttc
ttcttgggtagtgtcaacacaaatatcaattctgaatttctgaaccgctgccgcatgaat
tccattaacaactggcaagtgttcttccccatccatttccaggactacaaccctgatgtg
gcctatcacaaccagccacatcccaccacagttgatctggtcaaggatgcgggccatttt
gaccgcaggtcatttgaagagtcatgtttttacaactcagactacatggcaacacgtacg
cgaatggtggcggacgttcaagagaatgaggacattctagagacaatggacatctatgac
atgtttgtaaagtattcaggtctgcacgtattcagggcaatagagccagctttgcaccag
cagtaccgctaccaagcctgcaacccacgactcagtgaggacatatatcatagatgtgtt
cagagcaacttggaaagtctcggttctcgctcccagcttgccatgctgctgtttgaacaa
gaacaagggaacagcacttga
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