Lates calcarifer (barramundi perch): 108889879
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Entry
108889879 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: polybromo 1, like
KO
K11757
protein polybromo-1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108889879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108889879
03036 Chromosome and associated proteins [BR:
lcf03036
]
108889879
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108889879
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
108889879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108889879
NCBI-ProteinID:
XP_018542074
LinkDB
All DBs
Position
LG12:24527230..24538329
Genome browser
AA seq
1648 aa
AA seq
DB search
MSASSKRRRATSPSSSVSGGGDLDDTNSSTPGSGRKKRRIANVPPVDMIAVCHELFNAVR
DHKDEQGRQLSEVFLRVPKRRNQPDYYDVVSQPIDMTKIQYKLKSEDYNDVEQLTADFQL
MFNNAKSFYKNDSEEYQAACKLWEVYLQTRNEFVQPGDGDEDDEDGDDMMDNPGMSTEDE
TSTGSLKEVLEQLLEAVVSHTDPSGRLVSELFQKLPSKVHYPDYYAIIKEPIDLRAIAQR
IQIGYYKSVNAMAKDIDLMTKNAKTYNEPGSQVFKDANTIKKVFIQRKTELEHAEPTKSS
LRIRNRRSGQGDRLSGVSVALHYGSESEDDPVLSGSVCYDEGESEAESQSSSMEMSNPIF
QLYEAVRGARNNQGQVFSEPFQQLPSRREYPDYYQQIKQPIALQQIRAKMKNGEYENVEQ
MEADLNLMFENAKRYNMPNSSIYKRAFRLQQIMQAKKRDLLRRDDEDGDSILSSDAGSIK
RKSHKKNVKKNRMKALYAAVTEAREAGTSRRLCDLFMVKPSKKDYPDYYNVILEPMDLKT
IEHNIRNERYATEEALMDDMKLMFRNARHYNEEGSQVYNDADILEKILKDKRKELGPPPE
EEDVGSPKLKLRKSGVSPKKSKYLTPLQQRLNELYDAVRNFTDRRGRRLSTIFLRLPSRA
ELPDYYATIKRPIDMERLRSHMAAGRYQDVEALVEDFALMFNNACMYNEPESLIYRDALV
LHRVLLETRKQQEGGEDSXGPPAVGPLVRELIRNLFVSVLGHQDEEGRCYSDSLAEIPAL
DPAAPEKPPLNFDVIRMNVERGRYRRLDVFQEHMFEVLEKARRLHRTDSEIFEDAVELQQ
FFIKIRDELCKNGEILLSSALNYTLKHLHSDVDQEKREKIPKEIEEDKQKKEEEEEENKD
GEKAENLSGEAWKSESETERVYSQDCSFENSTYHVGDFVYVEPSESNLKPHIVCIERLWE
DEAGEKWLYGCWFYRPSETFHLATRKFLEKEVFKSDYYNKVSISKVLGKCVVMFVKDYFK
MQPEGYRAEDVYVCESRYAARNKSFKKIKIWAMPVSSVKLTSREVPLPVVRVASMFAKPD
QDKLAISYAVSGSFVDKEREDVPMEMSGAEPGCQYYEQLRYNNMWFKVGDCVYIQSHGLS
KPRVARIEKLWVQNGTTFFFGPIFIHPEETEHEPTKMFYKREVFLSNLEETLPMTCVIGK
CMVSSFKDYLSCRPTEVPEEDLLLCESRYIETEKQMKKFKGLKRFSYSAKVVEDEIFYFR
KLIVPQKEASPFLDKKIDELEVKLADMEDADDDMEDMDEEEEAPETPSMPQMQTPLTSDM
DIMPYTPSQSTPKVKGLSKKEGAKRKINMSGYILFSSEMRAVIKARHPDYSFGELSRLVG
TEWRNLEAPKKAEYEERAAKIVEQQERERPPQKQASPRAGTPVGALMGVVPSPSTMGMIN
QTMTPVSGMMGAYGPPYMSMQGPHEGLLSVATMPPHPAGGPHLPPHHLQQGMPGYPGMPH
QGMMGAGMNGMAGSPAPGNFMQQPGMFSPGQHAPPPYPGQGQLGQPSHLQPTTPMFVAPP
PKTQRVLHSEAYLKYIEGLNSESTTVSKWDQTLKAQRRDAHLTKEQESRLPAHWLKSKGA
HTTMADALWRLRDLMLRDSLNICQAYNL
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgagctccaagaggagaagagccacttcaccctccagcagcgtcagcggaggg
ggagacctcgatgataccaactcctctactcctggaagtggtaggaaaaaaagaagaatc
gccaatgttcctcctgtagatatgatcgctgtatgtcatgagctgttcaacgctgtcagg
gaccacaaggatgagcaagggaggcaacttagtgaagtttttctaagggtaccaaagaga
agaaatcagcctgattattatgacgtggtgtctcagccaattgatatgacaaaaatccaa
tataaactgaagtcagaagattataatgatgtggagcagctcactgcagatttccagctc
atgttcaacaatgccaaatcattctacaagaatgacagtgaggagtatcaagctgcatgc
aagctgtgggaggtatatttgcaaacaaggaatgagtttgtgcagcctggagatggagac
gaggatgatgaagatggtgacgatatgatggataatccaggaatgtcaacagaggatgag
acttcaaccggcagtttgaaggaggtgttggagcaactcttggaggctgtggtgtcacac
actgatccctcagggcgtctggtcagtgaactgttccagaaactgccttccaaagtgcat
tacccagactactatgccattataaaggagccaatagatctgagagcaatcgctcaaaga
atacagattggatactataaaagtgtcaatgccatggccaaggacattgacctgatgacc
aaaaatgccaaaacgtacaatgaaccaggatctcaggtttttaaggatgctaacaccata
aagaaagtctttatccagcggaagactgaacttgaacacgctgaacccactaaatctagt
cttcgcatcagaaatcgcaggtctggtcagggggatcgactttctggtgtcagcgttgct
cttcactatggttcagagagtgaggatgaccctgttctctctggctctgtgtgctacgat
gagggagagtcagaggctgagagtcagagttcaagcatggagatgagcaacccgatcttc
cagctgtatgaagctgtgaggggcgccaggaataaccagggccaggtcttctccgaacct
ttccagcaactgccctctcgaagggaatatccggattattatcagcagatcaaacagccc
atcgctctgcagcagatcagggcaaagatgaagaatggggagtatgaaaatgtggaacag
atggaggctgacctcaatctgatgtttgagaatgcaaagcgctacaacatgcctaactca
agcatttataaacgggccttcaggcttcagcagatcatgcaggcaaaaaagagggatctt
ctaaggagagacgatgaggatggtgacagcattctgtcatcagatgcagggagcatcaag
aggaaaagccacaagaaaaatgtcaaaaagaaccgaatgaaagccctatacgctgcagtg
acagaggccagggaagcaggcaccagtcgacgcctctgcgatctctttatggttaaacca
tccaaaaaggactaccctgactactataatgtcattctcgaaccaatggacctgaagacc
attgagcacaacatccgcaatgagcgttatgccacagaggaggctctgatggacgacatg
aagctcatgttccgcaatgccaggcattacaatgaggagggatctcaggtgtacaatgat
gctgatattctggagaagatactgaaggacaagcggaaggagttaggacctccgcctgaa
gaagaggacgtgggatctccaaaactgaaactaagaaagagtggtgtttctccaaagaag
tccaaatacctcacccctctccagcagcggttgaatgagctctacgatgctgtgcgaaac
ttcactgatcgtcgaggacggcgcctgagcacgatcttcctccgtctgccatctcgcgct
gagttgcctgactactacgccaccatcaagaggcccatcgatatggagcgcttgcggagc
cacatggcagccggacgttaccaagatgtcgaagccctggtggaagactttgctctcatg
ttcaacaatgcctgcatgtacaacgagcctgagtctctgatctatcgggatgctttggtg
ttacaccgggtgctgctggagacacgtaaacagcaggagggaggcgaggactccnntggg
cctcctgctgtgggacctctggtgcgagagctgatcaggaacctgtttgtgtccgtgctg
ggccaccaggacgaagagggccgatgctacagtgactcgctggctgagatccctgctttg
gatccagccgctcctgagaagccaccgttgaactttgatgtcatcaggatgaacgtggag
cgaggccgttacaggagactggacgttttccaagaacacatgtttgaagtgctggagaag
gcacggagattacacaggacagactcagagatatttgaggatgcagtggagcttcaacag
tttttcattaagatcagggatgagctatgcaagaatggagagatcctgctgtcctctgcg
ctcaactacacgttaaaacacctgcacagcgatgtggatcaggaaaagagggaaaaaatt
cccaaagagattgaggaggacaagcagaaaaaggaagaagaggaggaggaaaataaagat
ggtgagaaagcagagaacctgtcaggagaagcatggaagtcagagtcagagacagagcgt
gtatacagccaggactgcagctttgaaaacagcacctaccatgtcggggatttcgtctac
gtagaaccgtcggagtcaaaccttaagccacacattgtgtgtattgaacgtctgtgggag
gatgaagcaggtgaaaagtggctctatggttgctggttctacaggcccagtgaaaccttc
cacttggccacacgcaagtttctggaaaaagaagtcttcaagagtgactactacaacaaa
gtatccatcagcaaagtactgggcaaatgcgtggtcatgtttgtgaaggattatttcaaa
atgcaacctgagggctacagagctgaggatgtctacgtctgtgaatcccgctacgctgcc
aggaacaagtccttcaagaagatcaagatatgggccatgcccgtgagctctgtgaaatta
acctcacgggaggtgcccttgccggttgtccgagtagcttccatgtttgccaagcctgac
caggacaagctggcgatttcatacgcagtcagcggcagttttgtggacaaggagagagag
gacgtccctatggagatgagcggagctgagcccggctgtcagtattatgaacagttacgc
tacaacaacatgtggtttaaagtgggagactgtgtttacatccaatcacacggtctgtca
aagcctcgggttgccaggatagagaagctgtgggtgcagaatggaactactttcttcttt
ggacccatcttcattcatcctgaggagacggagcacgagcccacaaagatgttctacaag
agagaagtgtttctgagcaatctggaagagaccttgcccatgacctgtgtcataggaaaa
tgtatggtgtcctcctttaaggactacctgtcatgcagacctactgaggttccagaagag
gacctcctgctgtgcgagagccgctacatcgagactgagaaacagatgaaaaaattcaag
ggccttaaacgcttctcgtactctgccaaagtggtggaagatgagatcttctacttcagg
aaattgatagtgccacagaaagaagcatcgccgtttttggacaagaaaatagacgagctt
gaggttaaactggcggacatggaggatgcagacgatgatatggaagatatggacgaggag
gaggaggctccagaaactccttccatgcctcagatgcaaacaccgctcacaagcgatatg
gacatcatgccatacacaccttctcagtctactcctaaagtgaagggtttgtcaaagaag
gaaggggccaagaggaagatcaacatgagcggctacatcttgttcagcagtgaaatgcga
gcggtcatcaaagctcgacacccagactactcctttggggagctgagtcgacttgtgggc
acagagtggaggaacctcgaagctcccaagaaagcggagtatgaagaacgtgcggccaaa
atagtggagcaacaggagcgtgagaggccaccccagaagcaagcgtctcctagagcaggt
accccagtaggggcactgatgggggtggtgccttcgcctagcactatgggaatgataaac
cagaccatgacacctgtgtcaggcatgatgggagcttacggcccaccttacatgtccatg
cagggccctcatgagggcttgttgagtgtggccacaatgccacctcaccctgcagggggt
ccccacctgcctcctcaccatctccagcaaggtatgcccgggtaccctggcatgcctcat
cagggtatgatgggtgctggtatgaatggcatggcaggaagtcctgcaccaggaaacttt
atgcaacagcctgggatgttcagcccaggacagcatgcacctcctccatatccaggacag
ggccagttaggccagccctcacacctgcagcccaccaccccgatgtttgtggctccacca
ccaaagacccagagggtgctccactcagaggcctacttgaagtacattgagggcttgaat
tcagagtctaccactgtcagcaagtgggaccaaacacttaaagctcaaaggcgagatgct
cacctgaccaaagagcaggagagcaggctgccagctcactggctgaagagcaaaggagct
cacaccaccatggcagatgcactgtggcgcctgcgcgacctgatgcttagagactctctg
aacatctgtcaggcatacaacctgtaa
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integrated database retrieval system
