Lates calcarifer (barramundi perch): 108890051
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Entry
108890051 CDS
T04895
Symbol
brf1b
Name
(RefSeq) BRF1 RNA polymerase III transcription initiation factor subunit b
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108890051 (brf1b)
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
108890051 (brf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
TF_Zn_Ribbon
Cyclin_N
RB_B
Motif
Other DBs
NCBI-GeneID:
108890051
NCBI-ProteinID:
XP_018542330
LinkDB
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Position
LG7_1:74827..97962
Genome browser
AA seq
708 aa
AA seq
DB search
MSFRVCRTCGGADIDVDQARGSAVCTGCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSA
DGPVKAPLLGSGFHTSVGKESRAQTLQSGKRQIQQLGSQLQLNQHCLDTAFNFFKMVVSK
HLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPA
IDPCLYIPRFAHMLEFGVKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMH
KFRRTVKDVISVVKVCQTTLRKRLTEFEDTPTSQLTIDEFMRVDLEQECDPPSFIAAQNK
AKMQQLEQELARKLDEVEGEISCYKDEIETELEKSRPKLRGIYAAYTKEIDPEDVEVLSS
TSEPEEREVEDAELQAATQHLTQDFLCQVIQEEEEEGRANKTGDGEQEVGPEKEGVGPQR
QVAPLAVILGKLPSSLDLQQTFQTFSKSETCHKPDDEDSESGELDLEGIDDQEIEKYILN
DNEVQVKTELWMKQNAEYLKEQQEKEERIRKEKEQGTYKEKKKKKSKRKEQIEALTAGEA
IEKMLEKKKISSKINYDVLRDLNSRGTGSGGGSSPSRASSDPPDPNNTNTTTRKRLNRRR
RKKTSEANQDLVTNASIMGKRFRRLISSTSKKKKTAPQVETSISMTTKPTETAAEPSPEP
EPDVSSTLSAAPPPVEEEEEEEEVEEECVSALKLVGDYGCEAEEEDVF
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcagggtgtgcaggacctgtgggggggcagacatcgatgtggatcaggctcgg
ggcagcgcggtgtgcaccggctgtggttcggttctggaagacaacatcattgtctctgag
gttcagttcgtggagggaagtggaggagtttcatctgctgtgggacagttcgtctctgct
gacggtccagttaaagctcctcttcttggttctggtttccacactagtgttggtaaagag
tccagagcccagaccctgcagagtggaaagcgtcagatccagcagttgggcagtcagctg
cagttgaaccagcactgtttggacacagccttcaacttcttcaagatggtcgtcagtaaa
cacctcacccgaggacgtaagacggagcacgtcattgcagcatgtctctacctggtgtgt
cgcactgaagggaccccacacatgctgctggacctgagtgacctgctgcaggtcaacgtt
tacatcctgggaaagacattcctgctgttggctcgtgagctctgcatcaacgctcccgcc
attgacccgtgtctctacatccctcgtttcgcccacatgttggagttcggggtgaagact
catgaagtttccatgacggctcttcgtctggttcagaggatgaagagagactggatgcac
acaggacgccgaccgtccggcctctgtggagcagctctcctggtggctgctcgaatgcac
aagtttcgtcggacagtgaaggatgtgatcagtgtggtgaaggtctgtcagaccactctg
aggaagaggttgacagagtttgaggacacgcccaccagtcagctgaccatcgatgagttc
atgagagtggatctggagcaggaatgtgatccaccgtccttcatcgctgcacagaacaag
gccaagatgcagcagctggaacaggagctggccaggaagctggacgaggtcgaaggagag
atcagctgctacaaagacgagattgagacggagctggagaagagccgacccaaactgaga
ggaatctacgccgcctacaccaaagagatcgaccctgaggacgttgaggttttgtcctca
acctctgaacctgaagagcgagaggttgaggacgcagagctccaagccgccacccagcac
ctgacccaggacttcctgtgtcaggtgattcaggaggaggaggaggaggggcgggctaat
aagacaggagacggcgagcaagaggtggggccagagaaagagggggtggggcctcagcgt
caagtggcccctttggctgtcatcctggggaagctgccaagcagtctggacctccaacag
acattccagaccttcagcaagtcagagacctgccacaaacctgacgatgaggactcggag
agtggtgagctggacctggagggtatcgatgatcaggagattgagaagtacatcctgaat
gataatgaggtccaggtgaagacggagctgtggatgaaacagaacgcagagtacctcaag
gagcagcaagagaaagaagagaggatcaggaaagagaaagaacaggggacgtataaagag
aagaagaagaagaagagtaagagaaaggagcagattgaggcgttgacggccggtgaagcg
atagagaagatgttggagaagaagaagatctccagtaagatcaactacgatgtcctcaga
gacctgaatagccgagggacagggagtggggggggcagcagtcccagcagagcatcctct
gacccccccgaccccaacaacaccaacaccaccacacggaaacgactcaaccgtcgccgc
cgcaagaagactagtgaggctaaccaggaccttgtcactaatgctagcatcatggggaag
aggttccgtcgtctcatttcctccacatcaaagaagaagaaaacagcccctcaggtagaa
acctccatttccatgacaacaaagccaacagagactgcagcagaaccaagtcctgaacct
gagccagatgtcagctccaccctctcagctgctcctccccctgtggaggaggaggaggag
gaagaggaggtagaggaagagtgtgtcagcgcactgaaacttgtaggagattacggctgt
gaggcagaggaggaggacgtcttctag
DBGET
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