Lates calcarifer (barramundi perch): 108890620
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Entry
108890620 CDS
T04895
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108890620
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108890620
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108890620
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108890620
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108890620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
ubiquitin
Motif
Other DBs
NCBI-GeneID:
108890620
NCBI-ProteinID:
XP_018543081
LinkDB
All DBs
Position
LG2:1082368..1099772
Genome browser
AA seq
1410 aa
AA seq
DB search
MEMVPSEENQFVPKEGVFWSCRQSIFDEMKRISQIQNAAEEPRVLCIIQDITSAKTVNER
LTLNLPASTTLSKLYEDVAHKAGYVNGTFDLAWGNTPEMAPLDHNSEMSLSDSGFEPGGK
RNFLQLTDKDGEQPQIASDESGTADSSGLDDSSQERFIGPLPRDGTAGCSGDYSSPSYSY
SSILSKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYNWEFEESEEDPVTSIPYQL
QRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDIQELCRVMFDALEQKWKQTEQADL
INQLYQGKLKDYVRCLECGYESWRIDTYLDIPLVIRPFGASQAYGSVEEALQAFIQPETL
DGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELD
MSPFIDVEDEVLTSSNVKSSTVLPPGACNSQVTSLWKSPQTESCTDSGAENEGSCHSDQM
SNDFSTDDCVDEGICLDSTSSTERVLKPKSLLTFELFSVMVHSGSAAGGHYYACIKSFSD
GQWYSFNDQHVSKITQDDIRKTYGGSSGSRGYYSSAFASSTNAYMLIYRLKDPSRNAKYL
AVDDFPEHIKSLVQKEKESEEQEKRQREIERNTCKIKLFCMHPVKMMLESKLEVHKDKTL
REATEMAYKLMELEGVVPLDCCRLVKYDEFHEYLERSYEGEEDTPMGLLLGGVKSSYMFD
LLLETRRPEQVFQPYKPGEVMVKVHVVDLKSETIASPISVRAYLNQTITEFKQLIAQATG
LSAETMRVVLERCYNDLRLLYVPNKTLKAEGFFRSNKVFVESSESTDHQVAFTDSLLWKL
LDRHGNTIRLLVLLPEQSPGTLANRTLCQKVGGDSDVPFDGSKGNRKSVEAILEESTEKL
KNLSLQQQQQGSSTSDSQKSSDASDFEHIESPTQEADSNSSLCVAADNRELENRIRATAG
SSGGASSDPENHFACEERSDSEVNNDRSTSSVDSDILSSSHSSDTLCNADSGPIQLANGL
DSHSITSSRRSKAHEGKKETWDTAEEDSGTDSEYDDNGKSKAEAQYLYFRAEPCSQDDSS
WDAQKCLVVHVDKRITLAAFKQNLEPYVGVTSTQFKVFRVYANNQEFESVRLNETLSSFS
DDNKITIRLGRALKKGEYRVKVYQLLVNEPEPCKFLVDTVFAKGMTVRQSKEELLPQLKE
QCKLDLSIDRVRLRKKTWKNPGTVFLDYHVYEEDISISSNWEVFLEVLNEPEKMKSMSQL
AVLTRRWSPATMKLGPFQEVILESSSVEELKEKLSEMSGIPLENLEFAKGRGTFPCDISV
LEIHQDLDWNPKVSTLNVWPLYICDDGAVVFYRDSTEEPMELSEDERNELMKKESSRLLK
TGHRVSYSPRKEKALKIYLDGGPAKDPGQD
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgcctagcgaggagaaccagttcgtacccaaagagggtgtgttttggagt
tgcagacaaagtatttttgatgagatgaagaggatttctcagatccaaaatgcagctgag
gagcccagagtgctgtgcataatccaggacatcaccagtgcaaagacagtcaatgagaga
ctgaccctgaacctgcctgcttccaccactctctccaaactgtacgaagatgttgcccac
aaagcaggatatgtaaatggcacctttgaccttgcctggggaaatacaccggagatggca
ccactggaccataacagtgagatgtccctctcagattctgggtttgagcctggtggtaag
aggaatttcctccagcttacagacaaagatggagagcagcctcagattgcgtcggatgag
tcaggaacagcagacagcagtggactggatgacagctcccaggagaggtttattgggccc
ctaccaagagacggcactgcaggctgcagtggtgactacagcagtccatcttactcctac
tcatccatcctcagcaaatctgagacaggttacgtgggcttggttaaccaagccatgacc
tgctatttgaacagtctgctacaaacacttttcatgaccccagagttcagaaacgcgctc
tacaactgggagtttgaggagtcagaggaggatccagtcaccagtatcccctaccagcta
cagaggctgtttgtcctgctgcagacgagtaagaagcgggcgattgagaccactgatgtg
acgcggagttttggctgggacagcagtgaggcttggcagcagcatgacatccaggagctg
tgcagggtcatgtttgatgccctggagcagaagtggaagcagacagagcaggctgacctg
atcaaccagctgtaccaggggaagctgaaggattatgtccgctgtctggagtgtggctat
gagagctggaggattgatacttacctggacatccctcttgtgatcagaccctttggagcc
agccaggcgtatggcagtgtggaggaggctttgcaggctttcatccaacctgaaactctg
gacgggcccaaccagtacttctgtgaacgctgcaaaaagaaatgtgatgcccgtaagggt
ctgagatttctgcactttccctacctgctgacactacagctgaaacggtttgattttgac
tacaccactatgcatcgcatcaaactcaacgaccgcatgactttccctgaggagcttgac
atgagtccattcatcgatgtggaagatgaggtgctgacgtcgtcaaatgttaaatcctct
actgtgcttcctccaggagcgtgtaacagtcaggttacctccctctggaagtcgcctcag
acagagagctgcactgacagtggagcggagaatgaaggcagttgccacagcgaccagatg
agcaatgatttttccactgatgactgtgtggatgagggcatctgcttggacagcaccagc
agcacagagagggtgctgaagccaaagagtttgctgacctttgagctgttttccgtcatg
gtccattctgggagcgctgcaggtggccactactacgcctgcattaaatccttcagtgat
ggccagtggtacagtttcaacgatcagcacgttagcaagatcacccaggatgatatcagg
aagacatatggggggtcctcagggagcagaggctattattccagtgcctttgcaagctct
acaaatgcatatatgctgatttatagattgaaagatccctcaaggaatgcaaagtattta
gctgtggacgacttcccagagcacataaagagtttggttcagaaggagaaagagtctgaa
gagcaggagaagagacagagggagattgagcgcaacacttgcaagatcaagctgttctgc
atgcatcctgtgaagatgatgttggagagcaagctggaagtgcacaaggacaaaactctc
agagaagcaacagagatggcctacaagctgatggagctggagggagtcgtccctctggac
tgttgtcgcttggtcaagtatgacgagtttcacgaatacctggagcgctcgtacgagggc
gaggaggacacaccgatgggtctcctgctgggaggagtcaagtcctcgtacatgttcgac
ttgctgctagagactcgccggccagagcaggtgttccagccttacaaacccggagaggtg
atggtgaaggttcatgttgtggatctgaagagtgagaccatcgcctctccgatcagcgtt
cgggcgtatttgaaccagacgatcactgaattcaaacagcttattgcacaggctacaggg
ctatctgcagaaaccatgcgtgtcgtcctggagcgttgctacaatgacctccggctcctt
tatgttccaaacaagacactgaaagctgagggattcttcaggagcaacaaggtttttgtg
gagagctctgagtcgactgatcatcaggttgctttcactgactcactcttgtggaagctg
ttggatcgtcacgggaatacgatccgactcttggtcttactgcctgagcagtctcctggt
accttggccaacagaactctttgccaaaaagtgggaggtgactctgacgtgcccttcgat
gggtcaaagggtaacaggaagtctgtggaggccatcctggaggagagcacagagaagtta
aagaacctgtctctgcagcagcagcagcagggctccagcaccagcgacagccagaaaagc
tccgacgccagcgacttcgagcatattgaatccccaacccaagaggccgactcaaactct
tcgctctgcgtggccgcagacaacagagagctggagaaccggatcagggccacggctggg
agcagcggcggggcctcctctgaccccgagaaccactttgcctgtgaggagcgctcggac
tctgaggtgaacaacgaccgcagcaccagctcagtggacagcgacatcctcagctccagc
cacagcagcgacacgctgtgtaacgcagacagcggcccgatacagctggccaacggtctg
gactcacacagcatcacgagcagccgacgctccaaagcccacgagggcaaaaaagagacc
tgggacactgctgaagaagactctgggacagatagcgagtatgacgacaacgggaagagc
aaggcagaggctcagtacctgtacttcagagcagaaccttgttctcaggatgactcctcg
tgggatgcacaaaaatgtctagtagttcatgtggacaagagaataacattagcagcgttt
aaacagaacctggagccgtacgtaggagtgacctcgacgcagttcaaggtgtttcgtgtc
tacgccaacaaccaggagtttgagagtgtgcggctcaacgaaacactctcatcgttctct
gacgacaacaagataaccattcgacttggaagagcactgaaaaagggtgaatacagagtg
aaagtgtatcagctactagtgaatgaacctgagccctgcaagttccttgtggacacggtg
tttgccaagggcatgactgtcagacagtccaaagaggagctgcttcctcagttaaaagag
cagtgcaagcttgacctcagcattgacagggttcgtctcaggaaaaagacatggaagaac
ccaggcacagtgtttctggattaccacgtctacgaggaagacatcagcatctcctccaac
tgggaggttttcctggaagtccttaatgaaccagagaagatgaagtccatgtcgcagctg
gctgtcctgacccggaggtggagcccggctacgatgaagctgggaccttttcaggaagtg
attctggagagcagcagtgtagaagaactgaaggagaagctcagtgaaatgagtggtatt
cctcttgaaaacctggagtttgcaaagggcagaggaacgtttccctgtgatatttccgtg
ttggagatccatcaggatctggactggaaccctaaggtgtcaactctgaatgtgtggcct
ctgtacatctgtgatgatggagctgtggtcttctacagggacagcacagaggagcccatg
gagctgtctgaggacgagcgcaacgagctgatgaagaaggagagcagccgtctgctcaag
accggacaccgcgtcagctactcaccgcgcaaggagaaggccctgaagatctacctggac
ggaggccctgccaaggacccggggcaggactga
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integrated database retrieval system
