Lates calcarifer (barramundi perch): 108893342
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Entry
108893342 CDS
T04895
Name
(RefSeq) tripartite motif-containing protein 16-like isoform X1
KO
K12006
tripartite motif-containing protein 16
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108893342
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108893342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
PRY
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-RING_6
U-box
zf-RING_10
zf-ANAPC11
Gp58
Motif
Other DBs
NCBI-GeneID:
108893342
NCBI-ProteinID:
XP_018546817
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Position
LG20:15962733..15965192
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AA seq
557 aa
AA seq
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MAQQVIQLDQEKLSCSICLDLLKEPVTIPCGHSYCMSCIKTYWGEDDQEKTHSCPQCRQS
FTPRPALVKNTMFADLVEELKKAGLQAASPDHLYAGPGDVACDFCTERKLKAFKSCLVCL
ASYCEQHLQPHYDVAPLKKHKLVEPTSRLQENVCSLHDEVMKIYCRTDQKYICYLCSMDE
HKGHDTVSAAAERAERQKELEVSRQKIKQRIQDREKDVKVLQQELEAINLSADKAVENSE
KIFTDLIRLIEKRSSEVKQQIRSQQKTDVSRVKELEEKLQEEITELRRKDADLEQLSHTE
DLTILNKYPSLSHLGKSTSLPSIKQKSKQYFEDVTAAVSKVRDKLKAVLNEEGAKVSLKN
TGADVLPQHKEPKTRAEFLKYARQITLDPVTANIFLSLSKNNRKATLMPAGAEMFWIHPE
KFFKWWQVLSTEGLTGRCYWEVKWSGKVLVAVAYKDIRRLGTRSECGFGNNHKSWALECD
SDGFTFRHNNNSTPISGPQSSRIGVYLDHRAGTLSFYSVTKTMNLLHRVQTRFTQPLYAG
LWLPEMAGDSAEVCELR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcaagtgattcagctggatcaagaaaaactgagctgttcaatctgtctggat
ctcctaaaggagccggtgactattccctgtgggcacagctactgtatgagctgtattaaa
acctactggggtgaggatgatcaggagaaaacacacagctgtcctcagtgcaggcagagt
ttcacaccgaggccagccctggtgaaaaacaccatgtttgcagacttagtggaggaactg
aagaaagcaggacttcaagctgcttcacctgatcatctctacgctggacctggagacgtg
gcctgtgatttctgcactgagaggaagctgaaagccttcaagtcctgtctggtgtgtttg
gcctcttactgtgagcaacaccttcagcctcactacgatgtagctccattgaagaaacac
aagctggttgaacccacctccaggcttcaggagaatgtctgctctctccatgacgaggtg
atgaagatttactgccgcactgatcagaagtatatctgttatctctgctccatggatgaa
cataaaggtcatgacacagtgtcagctgcagcagaaagggccgagaggcagaaggagctc
gaggtgagtcgtcaaaaaatcaaacagagaatccaagacagagagaaagatgtgaaggtg
cttcaacaagagttggaggctatcaacctctctgctgataaagctgttgagaacagtgag
aagatcttcactgacttgatccgtctcatcgagaaaagaagctctgaagtgaaacagcag
atcagatcccaacagaaaactgatgtgagtcgagttaaagagctcgaggagaagctgcag
gaagagataactgagctgaggaggaaagatgctgatctggagcagctctcccacacagag
gacctcaccattctaaacaaatatccatctctgtcacatttgggtaaatcaacaagttta
cccagcatcaaacaaaaatctaagcaatattttgaagatgtgacagcagcagtgtcaaag
gtcagagataaactaaaggctgttctgaatgaggaaggggcaaaggtctcactgaaaaat
actggagcggatgttttaccgcaacataaagagcccaaaaccagagctgagttcttgaaa
tatgcccgtcaaatcacactggatccagtcactgcaaacatatttttgtcactgtctaag
aacaacagaaaggcaacgctgatgccagcaggagcagagatgttttggattcacccagaa
aaattctttaaatggtggcaggtcctgagtacagaaggtctgacagggcgttgttactgg
gaggtgaagtggagtggtaaagtattagtagcagttgcatacaaggatatcagaagactc
gggacaaggagtgaatgtggatttggaaataatcacaaatcttgggcattagagtgtgat
agtgatggttttacattcagacataacaataattctacccccatctcaggccctcagtct
tccagaataggagtgtatctggatcacagggcaggtactttgtctttctacagtgttact
aaaaccatgaatctcctccacagagtccagaccaggttcactcagcctctctatgctgga
ctttggcttccagaaatggctggagacagtgctgaggtgtgtgagctcaggtag
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