Lates calcarifer (barramundi perch): 108893344
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Entry
108893344 CDS
T04895
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108893344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108893344
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108893344
Spliceosome [BR:
lcf03041
]
Complex A
U2 snRNP components
U2 related factors
108893344
Complex B
108893344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
108893344
NCBI-ProteinID:
XP_018546819
UniProt:
A0A4W6DMH6
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All DBs
Position
LG20:complement(15981540..15992055)
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AA seq
1065 aa
AA seq
DB search
MGRESRHYRKRSASRGRSAGSRSKSRSPDKRSKKDDRDRDRSRRDRSRSRDRRRSRSRDR
KRARRSRSRDRRRSRSRDRRRSGSRSRARRSRSGSPSKSRRVDEKSRSKEKDSLDPLSDK
KKAKEEKEDEKVEDQQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMK
QGKKWSLEDDDDDDEDGSAPMEGDDDDDGEEKGDRKEKEIKEEKKEEGEKEKETPMETQA
EEDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGEL
MENDQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYEAYRKNFYVEVPELAR
MTPEEVNAYRLELEGITVKGKGCPKPIKTWVQCGVSMKILNALKKHSYEKPTPIQAQAIP
AIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKE
CKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVT
YVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG
GRSVVCSDVEQHVLVIDEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASY
PCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYSCPNHYEDYV
HRAGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSTVPPELEQLWASFKDQQKAEG
KTIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSK
KRVKDLSAPGAATGPAGAVATTAAAPGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLG
AEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQA
ETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKI
YLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtccagacactacaggaagcgttccgcttctcggggacggtcagcaggt
agccgatcaaagagtcgctccccggacaaacgctccaagaaagacgaccgtgaccgagac
cgaagcagaagagacaggtcacggagccgggaccgccgcaggtcccggtccagagacaga
aaacgagccaggcgatccaggagcagagacaggaggaggtccaggagcagagacagaagg
aggtctggcagtaggagcagagccaggaggtcccgatcgggcagccccagcaagagcaga
agagtagatgaaaagtcaaggagtaaggaaaaagacagccttgatcctttatctgacaag
aagaaggctaaagaggagaaagaggatgagaaggttgaggatcagcaagactttgaccag
aacaagttggaggaggagatgaggaagcggaaggagcgggtggagaagtggagagaagag
cagaggaagaaggccattgaaaacatcggagagatcaagaaagaactggaggagatgaag
cagggcaagaagtggagcttggaggatgatgatgacgacgacgaggatggttcagcgccg
atggaaggagacgatgacgatgatggggaagagaagggggacaggaaagagaaggagata
aaggaggagaagaaagaggagggggagaaggagaaggagactcccatggagacgcaggcc
gaggaggacgacgtggatcctctggacgcctacatggaggaggtgaagcaggaagtgaag
aagtttaacatgggagcaatgaaaggaaatgataagaaaggagcaatgactgtaaccaaa
gtggtgacagttgttaaaaccaagaaaggacctcacactcacaagaagaagggtgagctg
atggagaatgaccaggatgccatggagtactcatcagaggaggaggaggtggatctgcag
acagctctgacgggcttccagactaaacagaggaaaatcctggagcctgtggaccacggg
aagatccagtatgaggcgtaccgcaaaaacttctatgtggaggtgcctgagttggccagg
atgactccagaagaggtgaacgcatacaggttggagctggaaggcattactgttaaaggg
aagggctgccccaaacccatcaagacctgggtgcagtgtggggtatccatgaagatcctc
aacgcactgaagaagcacagctacgagaagcccacccccatccaggcacaggctatcccc
gccatcatgtcaggccgagacctcattggcatcgccaagactggcagtgggaaaaccata
gccttcctattgcccatgttccgacacatcatggaccagaggcccttggaagagtctgag
ggacccatatctgtaatcatgactccgaccagagagttggctctacagatcaccaaggag
tgtaagaagttctccaagccgctgggcctcagggtggtgtgtgtttatggaggcactggt
atcagcgaacagattgctgagctgaagagaggagctgagatcattgtgtgcacaccagga
agaatgattgacatgctgggggccaacagcggtcgagtcaccaacctgcgcagagtaaca
tatgtggtcttggatgaagcagacaggatgttcgacatgggcttcgagccacaggtgatg
cgtatcgtggacaacgtgcgtccagaccgtcagacagtcatgttttcagccaccttcccc
agagccatggaggcactagctcggaggatcctgtctaaacctattgaggtccaggtggga
ggccgcagtgtcgtctgctctgatgtggaacaacacgtgttggtgattgatgaggacaag
aagttcctgaagctgttggagattctgggtcactaccaggagaagggttcggtcatcatc
tttgtggacaaacaggagcacgcagacggactgctaaaagacctgatgaaagcttcatac
ccatgcatgtcactgcatggaggaattgaccagtacgacagagacagcatcatcaatgac
ttcaagaatggagcttgtcgtctgatggtagccacctctgtggcagccagaggccttgac
gtcaagcagctgatcctggtagtcaactacagctgtcccaaccactatgaggactatgtc
cacagggctggacgcacaggccgagcaggcaacaagggctacgcctacaccttcatcaca
gaggatcaggttcgctatgctggggacatcatcaaagcgttggagctgtcgggctccacc
gtcccgccagaattggagcagctctgggcctccttcaaagaccaacagaaagcggagggt
aagaccattaagagcagcagcggcttctcaggaaaaggcttcaaatttgacgagacagaa
cacgccctggccaatgagaggaagaagctgcagaaagctgctcttggactgcaggactct
gatgatgaggacggagccctggatatcgaggagcaaatcgagagcatgttcaactccaag
aagagggtgaaggatctgtctgctcctggagctgccacaggacccgcaggagcagttgcc
accacagcagctgctcccggagggctgccaggccttggacccacgtccgctggaaacatc
cagaaactggaaatggccaagaggctggcgctcaagatcaatgctcagaagaacttgggt
gccgaggctcaggacgtgatgcaacaggccacaaacgccatcctgcggggcggcaccatc
atgacaccctctgtgtcagccaagactatcgccgaacagctggcggagaagatcaatgcc
aagctgaactacacccctgtggagaagctggaggaggagcggcaggcagctgaacaggca
gagaccgtcaaaagatacgaagaggagctggagatcaacgacttccctcagacggccagg
tggaaggtgacatctaaagaagctctgcagaggattggagaatactctgaagccgctatc
accatcagaggaacctatttccctccaggcaaagagcccaaggagggagaacgcaagatc
tatctggctattgaaagtgctaatgaactggctgtgcagaaagccaaaacggagattaca
cggttaatcaaggaagagctcatcagattacaaaattcctaccagccgacgagcaaaggc
cggtacaaagtgttgtag
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