Lates calcarifer (barramundi perch): 108897341
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Entry
108897341 CDS
T04895
Name
(RefSeq) VPS10 domain-containing receptor SorCS1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108897341
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Others
Others
108897341
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BiPBP_C
Motif
Other DBs
NCBI-GeneID:
108897341
NCBI-ProteinID:
XP_018552434
UniProt:
A0A4W6D6E9
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Position
LG16_LG22:complement(10922327..10967251)
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AA seq
1242 aa
AA seq
DB search
METRLGHCLFVIFSEWIWLFSLTSSLGGTKGAEVRCIPPCRLSLITAFPRELSALDLTNS
GETPAEEFVGFFEGSPGAEPTAGGEEKPNVAEFTASEETSSKVQPRLRGNKTSCLQEDAS
NGQQKLSHSKEFPAPLPTNVRENGTGDAKNNSFYGGNGAQVDVTVNEDEDVASWRRARRS
AETWSRFRPEGGDEASFSDQEEFQLISSTFALSGDTAHNQAMVHWSGQNSSVILMLTKYY
DFNTGRVTESSLWRSTDYGTTYEKLNEKVGPKTILSYLYVSPNNKRKIMLLTDPEVESSL
LISLDEGASYQKHSLSFDILSLLFHPEQEDWILAYSHDQKLYVSVEFGRRWQLVHDGVVP
NRFYWSRLGLDKEQGMIHLEISVSDGRSQYITCKLQNCSDGNKGKPFPGFIIPNSLVVQD
EYVFIQVPIGGQSVHYVSYKRNSFYPMKLPKYTLPKDLQIISTDDNQVVAAIQDWHQNDS
YNLYMSESRGLFFTLMLENVVSSKGPEGNIMIDLYEVAGIKGVFLSNKVVENQVKTYITY
NKGRDWHLLQAPTTDLQGNKVYCEQPFCSLHLHLHVSENPYTSGNIVSKDSAPGIIIASG
VVGPELTTTNVSIFITSDAGNTWREVFQEEYSVFFLNQGGSLVAIRHTPLPIRHIWLSFD
EGRNWDKYSFTSSPLYVDGVLGEPGEDTLIMTIFGHFSHRSEWQLVKIDFRSVFQHRCTS
EDYLTWQLHSEGEVCIMGMKRIFQKLKANVRCVKARDQYISQMSDSCPCTDADFECDYGF
ERQVDGSCTPAFWFIPSATSRDCITGESFLNTTGYRKALSNNCTDGVLLKYSPRRQKCPS
QAPRGLQLFTSEGTLVATVGRNVTFLVFLEEGLGSTTSITVDFGDGTAISYVNISSIDDG
VKHMYSKVGIYQVSATASNSLGFDRVILYLHVSCQLEQVLLSAPSVVVKNKAVNLTTVLR
PSNVGTVIYYWWFDNKTEPVVTLDGAMSFTFPKEGSHRVTVQASAGNTVHQDQMTVAVYD
YFRSHVLAFSSNLDELNPGVSEWREDISRVVKSSMVQVTGIGEDQLLVTVLPGLPTTAEI
FIVPEKRSRDGATDEKWVHLDQLSQVLLSALNQDLIQFTLKPGVQVNVYATRLSPAPLVD
SSDSGHSGTAVIMLVSVVLMGLAIFVIYKFKRKIPGINTYTAEQPDKEQEVIPTVTSIAV
PNPEGDKLTSLDHVDVQLDSKSRGYLPSHTDIKLSDEAPHVF
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcgcctcggtcactgcctttttgtcattttctctgagtggatttggctcttc
tccctaacttccagtctgggcggaacaaaaggagcggaggtaaggtgcattcctccgtgc
cggctgtcgctgattacagcgtttcctcgggaactctcggcgttggatttgactaattcc
ggcgagacacccgctgaagaatttgttggctttttcgaggggtcaccgggcgccgagccc
accgccggcggggaagaaaagcccaacgttgcggaatttaccgcgagcgaagaaacttcg
tccaaagtgcagccacggttgcggggaaataaaacaagttgcctccaggaggacgcgtca
aacggtcaacaaaaactttcccactcgaaagagttccctgcccccttacccacaaacgtg
agggaaaacggcaccggcgacgcaaagaataacagcttttatggaggaaatggggcgcag
gttgatgtgacggtaaatgaggacgaggatgtggccagttggagacgagcacgaaggagc
gcagagacttggtcccgattcagacccgagggtggggacgaggcttcgttttcggaccag
gaggagtttcagctcataagttcgacatttgcactcagcggggacacggctcacaaccag
gccatggtgcactggtccggacagaacagcagcgtgatcctcatgctgacaaaatactac
gacttcaacaccggcagagtaacagagagttctttatggaggtcaactgattatgggacc
acatatgagaaacttaatgagaaagttggaccaaaaaccatactgagctacttgtatgtg
agtccgaacaacaagaggaagatcatgttactgaccgacccggaggtggagagcagcctg
ctcattagccttgacgagggggcgtcctatcagaaacacagcttatcgtttgatatcctc
agcctgctttttcaccccgagcaggaggactggatcttggcttacagccacgaccaaaag
ctctatgtctctgttgagtttgggaggagatggcagcttgtacatgacggcgtcgtcccc
aacagattctactggtccagactgggtttagataaagagcaaggaatgattcacctggag
atcagcgtctctgatggacggtcacagtacataacttgtaaacttcagaactgctctgat
ggaaacaagggcaagcctttccctggatttatcatccctaattccctggtggttcaggat
gaatacgttttcatccaggtgccaataggtggccagtctgtccattatgtgtcctataaa
agaaactctttctacccgatgaagcttcccaagtatactctgccaaaggacttgcagata
atcagcaccgatgataaccaggtggtggcagcgattcaggactggcaccagaatgactct
tacaacctgtacatgtctgagtccagaggcctgttcttcaccctcatgctggagaatgtt
gtgagcagcaaaggacccgagggcaacatcatgatagacctgtatgaggttgctgggatt
aaaggggtgttcctgtcaaataaagttgttgagaaccaagtgaaaacttatatcacatac
aacaaggggagagactggcatcttcttcaggctccaacaaccgatctccagggaaacaag
gtctattgtgagcaaccgttctgctcgttacatctgcaccttcacgtgtcggagaatccg
tacacctcgggaaacattgtcagcaaagactcagctccaggaatcataatagcatcgggt
gtggttggacctgagctgaccactactaatgtcagtattttcatcacatctgacgctgga
aacacctggagagaggtttttcaggaggagtacagtgtgtttttcctgaatcaaggcgga
tctctggtggccatccgacacacacctctgccaattagacacatttggctgagttttgat
gagggcagaaactgggacaaatatagcttcacctcctctccgctctatgttgatggggtg
ctgggggagcccggagaggacacccttataatgacaatatttggtcatttcagtcatcgt
tccgaatggcaacttgtcaaaatcgacttccggtccgtttttcaacatcgctgcacatct
gaagattatctgacatggcagttacacagtgagggggaagtgtgcatcatgggaatgaag
agaatcttccaaaaactgaaagcaaacgttcgatgtgtcaaggccagagatcagtatatt
tcccagatgtcagactcttgcccgtgcacagatgcagattttgagtgtgactacgggttt
gaaaggcaggttgacgggagctgcactccggctttctggttcattccttcagcaacatct
agagactgcatcacgggggagagcttcctcaacaccacaggatatcgcaaggctttgtct
aacaactgcactgatggagttctgttgaagtacagcccaaggcggcaaaagtgtcccagt
caggcccccaggggcctccagctcttcaccagtgagggcacactagtggcaacagtagga
aggaatgtcaccttcttggtctttctggaagagggtcttggctccacgacgagtataaca
gtggactttggcgacgggaccgccatatcatatgttaacataagctccatcgatgacggg
gtcaagcatatgtacagtaaagttggcatctaccaagtttctgctacagcaagcaacagt
ctgggctttgacagggtgatactctacctccacgtctcctgtcaacttgaacaggtcctg
ctctcagctccctcagtggtcgtcaagaacaaagcagtgaatctcaccacagtgttacgc
cccagcaatgtgggaacagtcatctattactggtggtttgataacaagacagagcctgtt
gtgaccctggatggagcgatgtccttcactttccccaaggagggaagtcaccgtgtcact
gtccaggcttcagctggcaacactgtccatcaggaccaaatgaccgtggcagtttatgat
tatttccggtcacatgtgttggccttttcttctaatttggatgagctgaaccccggggtg
tcagagtggagagaggacatcagcagagtggtgaagagctccatggttcaggtcacagga
atcggtgaggatcagctcctggtcacagtgcttccaggtttaccaaccacagcagagatt
ttcattgtgcctgagaagaggtcaagagacggggccacggatgaaaagtgggtgcacctg
gatcagctttctcaggttctgctaagtgctctgaaccaagacctcatccagttcacactc
aaaccgggggtgcaggtgaacgtgtacgccacgcggctgtctccggctcctcttgtggac
agcagtgatagcggccacagcggcactgcagtcatcatgctcgtttcagtcgtactgatg
ggcttggccatctttgtaatatataaatttaaaaggaagatcccaggcatcaacacatac
acagccgagcagcctgacaaagaacaagaggtcatcccgacggtgacctccatagcagtc
ccaaaccctgagggggacaaactgacctcactggatcatgtggatgtacagttggactcg
aaaagtagaggctacctgccatctcacacagacatcaagctctctgatgaagcgccccat
gtgttttaa
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