Lates calcarifer (barramundi perch): 108898497
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Entry
108898497 CDS
T04895
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108898497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108898497
03036 Chromosome and associated proteins [BR:
lcf03036
]
108898497
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108898497
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108898497
PBAF complex
108898497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Sarcoglycan_2
Motif
Other DBs
NCBI-GeneID:
108898497
NCBI-ProteinID:
XP_018553894
LinkDB
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Position
LG11:complement(23047738..23064795)
Genome browser
AA seq
482 aa
AA seq
DB search
MSKRPSYAPPPPPAPTTQMPSTPGFVGYNPYSHLAYNNLRLGGSSGGSSRNSSGITVPKP
PKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYLNE
YEAEKIEYNDSLKAYHNSPAYLAYINAKNRAEAAMEEESRQRQSRMDKGEPYMSIQPAED
PDDYDDGFSVKHTAAARFQRNHRLISDILSEIVVPDVRSVVTTARMQVLKRQVQSLMVHQ
RKLEAELLQIEDRHQDKKRRFLETTDSFNTELKRLCSQKVEVDMEKLAAEMAAAEEAARR
RAEEREREAAEQAEKAAQQAQQQQQEAAGNKNAEQSSSNAKNTTISTLGTKEEDMPSPMV
ADKAVPAGPTSDPHPAPLPLSDPPSSASDKATPPPEPSRESSTPSSSTPSDDGGSNNSMP
APPSENNAGVAAPDPPVAQEANSSAANPNMSTAPPPPPASEEPAPPPLPLHPPSQSSQQY
DM
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacggccatcctatgcccctccacccccccctgccccaacaacacaaatgcct
tccacccctgggtttgtgggctacaacccttacagccatctggcctacaacaacctccgg
ctgggagggagctccggaggctccagcaggaactcctcaggcatcactgtcccaaagcct
cccaaacctccagacaagccactgatgccttacatgcggtacagccggaaggtaagcagg
aaggtatgggaccaagtaaaggcatccaacccagacctgaagctgtgggagattggaaag
ataattggagggatgtggcgggacctgactgatgaagagaaacaggactacctgaatgag
tatgaagctgagaagattgagtataatgactctttgaaggcctaccacaactccccagcc
tacctggcctatatcaatgccaaaaaccgggctgaggccgcaatggaagaggagagcagg
cagaggcagagccgtatggacaaaggcgagccttacatgagcattcagcctgctgaagac
cctgatgactatgatgatggtttttcagtgaagcacacagcagctgctcgctttcagagg
aaccaccggctcatcagcgacatactcagtgagattgtggtgcctgatgtccgctcagtg
gtcaccacagcacgcatgcaggtcctcaagaggcaggtccagtctcttatggtgcaccag
aggaagctggaggcagaacttctgcagatcgaggatcgccaccaagacaagaaaagacgc
tttctggagaccactgactcattcaacactgagctcaagcggctgtgcagtcagaaggtt
gaggtggacatggagaagcttgcagcagaaatggcagctgctgaagaggcagcccggcgc
cgggcagaggagcgggagcgtgaagcagctgagcaggctgagaaagctgctcagcaggct
caacaacaacagcaggaggcagctggaaacaaaaatgcagagcaaagcagttctaatgct
aaaaacacaactatctccactttagggaccaaggaggaggacatgccttcaccaatggtg
gcagataaagcagtgcctgcagggcccacctcagatcctcatcctgctccacttcctcta
tctgatcctccctcttctgcctctgataaagcaactcctccccctgagccttccagggag
agcagcactcctagcagcagcacccccagtgatgatggtggcagcaacaacagcatgcct
gctccaccctcagaaaacaatgctggagtagcagctccagaccccccagtggcccaggaa
gccaactctagtgcagctaaccccaatatgtccacagcacctccacctccccctgcctca
gaagaaccagcccctcccccattaccactacacccccctagtcagagcagccaacagtat
gatatgtaa
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integrated database retrieval system
