Lates calcarifer (barramundi perch): 108901671
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Entry
108901671 CDS
T04895
Symbol
trim2a
Name
(RefSeq) tripartite motif-containing protein 2 isoform X1
KO
K11997
tripartite motif-containing protein 2/3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108901671 (trim2a)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108901671 (trim2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
zf-RING_UBOX
zf-C3HC4
SGL
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
Invasin_D3
DUF4934
zf-C3HC4_4
zf-ANAPC11
Prok-RING_4
PI3K_P85_iSH2
FPP
ANIS5_cation-bd
Cast
zf-RING_11
Baculo_PEP_C
Relaxase_C
Prefoldin
Anticodon_2
PFam54_60
YusW
SKA1
NPV_P10
Motif
Other DBs
NCBI-GeneID:
108901671
NCBI-ProteinID:
XP_018558743
LinkDB
All DBs
Position
LG5:9002967..9030572
Genome browser
AA seq
748 aa
AA seq
DB search
MASEGSTIPSPVVRQIDKQFLICSICLDRYENPKVLPCLHTFCERCLQNYIPAHSLTLSC
PVCRQTSILPEKGVAALQNNFFITNLMDVLQRGPDSCSQEAAALNNITAVATGQLLSCPN
HGGNVMEFYCPPCETAMCQECTSGEHGEHPTVPLKDVVEQHKASLQDQLDAVKKRLPEID
SALQTLSEILQQLTNQKSAIEDDIHTTFDELQKTLNVRKSVLLMELEVNYGLKQKVLQAQ
LDTLLQGQEGINSSCNFTEQALSHGTEAEVLLVKKQMSERLIELASQELPLQPGENDQLD
FLVETDGLKKSIHNLGTIVTTNAVASESVATGEGLRHCVVGVPTSITITTKDKDGDLCKM
GNAVITAEISSPDGGKGDGEILDNKNGTYEYLFTAPKEGTFSLSLRLYDQHIKGSPFKIK
ATKSIDVSPTSDGMKKRLKSPGSGHIKQKAIKRPASMYSTGRRKENPIEDDLIFRIGTKG
RNKGEFTNLQGVAASSLGKVLIADSNNQCVQIFSNDGQFKSRFGVRGRTPGQLQRPTGVA
VHPNSDIIIADYDNKWVSIFSSEGKFKNKIGSGKLMGPKGVSVDRNGHIIVVDNKACCVF
IFQLNGKLVTKFGNRGNGDRQFAGTLNGPHFAAVNNNNEIIVTDFHNHSVKVFNTEGEFL
LKFGSNGEGNGQFNAPTGVAVDVNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGP
QGLALTSDGHVVVADSGNHCFKVYRYLQ
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgaaggctccactattcccagccctgtggtccgccagattgataagcagttc
ctgatctgtagcatatgtctggaccgctacgagaaccctaaagtactgccctgcctgcac
accttctgtgagaggtgcctgcagaattacatcccggcccacagcctcacactgtcgtgc
cccgtgtgccgccagacctcaatcctgccggagaagggtgtggcggcattgcagaataac
ttcttcattaccaacctgatggacgtgctgcagcgggggccggatagctgcagccaggag
gccgccgctctgaacaacatcactgctgtggctacgggccaactgctctcctgccccaat
catggaggcaatgtcatggagttttactgtcctccatgtgagacagccatgtgtcaggag
tgtacaagtggcgaacatggtgaacatccaactgtgcctcttaaagacgtagtggagcaa
cacaaggcctcattacaggaccagctagatgctgtcaagaagagattaccagagattgac
tcggcccttcagacgctgtcggagatcctgcagcagctgaccaatcagaagagcgccatc
gaggatgacatccatactacctttgatgagttgcagaagaccctcaatgtccgaaagagc
gttttactcatggagctggaggtcaactatggcctcaagcagaaggtgctccaagcccag
ctggataccctgctgcagggacaggagggcatcaacagcagctgcaacttcacagagcag
gctctgagccacggcaccgaggccgaggtgctgctggtgaagaagcagatgagcgagcgt
ctcatcgagctggccagccaagagctccctctgcagcccggagagaacgaccaactggac
ttccttgtggagacagacggactaaaaaagtccatccacaacctgggaactatcgtaact
actaatgcagtggcctctgagtctgtggccactggtgaagggttacgacactgtgtggtg
ggcgtgcccacctccatcaccataaccactaaggacaaagatggagacctgtgcaagatg
ggtaacgcagtcataactgctgaaatctcctcacctgatggcggcaaaggtgacggagag
atactggacaacaagaatggtacttacgagtatctgttcacagcccctaaagaggggact
tttagtttatccctgcgtttgtatgaccaacatatcaaaggaagccccttcaagataaag
gccacaaagtctatagatgtgtcaccaacctcagatggcatgaagaagaggctgaagtct
ccaggcagtgggcacatcaagcagaaggccatcaagaggccggccagcatgtacagcaca
gggaggaggaaagagaaccccattgaggacgacctcatcttcagaatcggaacaaaagga
agaaacaaaggggagttcactaatctgcagggagtggctgcctcctctctgggaaaggtg
ctgatagcagacagcaacaaccagtgtgtccagattttctccaacgatggccagttcaaa
agtcgcttcggtgtccggggcaggactccgggtcaactgcagcggccgacaggcgtggcc
gtccacccaaacagtgacatcatcattgccgactatgacaacaaatgggtcagcatcttt
tcaagcgagggcaagtttaagaacaagatcggctcagggaagctgatgggccctaaaggc
gtgtcagtggacaggaacggccacatcatcgtggtcgacaacaaggcctgctgcgtcttc
atcttccagctcaacggcaagctggtcaccaagttcggtaaccgtggcaatggtgacagg
cagtttgcaggtacactcaatggccctcattttgctgctgtgaacaacaacaatgaaatc
atagtgacagatttccacaatcactcagtcaaggttttcaacacagagggagaattcttg
ctgaagtttggttctaatggcgagggcaacggccagttcaatgcccccacaggagtggct
gtggatgttaatggtaacatcatagtagcggattggggcaacagtaggatacaggtgttt
gatggcagtggttcgttcctctcctacatcaacacatcagcggacccgctgtacggcccg
cagggactggctctgacctctgatggacacgttgtggtcgctgactcaggcaaccactgc
ttcaaagtctaccgctacctgcagtag
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