Lates calcarifer (barramundi perch): 108902765
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Entry
108902765 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108902765
03015 mRNA surveillance pathway
108902765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108902765
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108902765
5.6.2.5 RNA 5'-3' helicase
108902765
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108902765
mRNA cycle factors
Common to processing body (P body) and stress granule
108902765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
108902765
NCBI-ProteinID:
XP_018560279
LinkDB
All DBs
Position
LG17:18751948..18766491
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGASQGNGP
NSQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcttggacaccgaggaa
gcggagttgctcggagcggatacccagggctccgagtatgatttcaccgatttcacctta
cccagccagacgcaaactcaaggccagacccagagccaactggacagccaggtaaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaagccagccagctg
ttggcggagcttaactttgaggaggatgaagaagacacgtactacaccaaagacctgcct
gtgcacgcatgcagctactgtggtatccacgatccagcgtgtgtggtgtactgcaacacc
agcaagaagtggttctgtaatgggcgtggcaacacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaggaggtgacgctgcataaagatgggccgctcggcgagacg
gtgctggagtgttacaactgtggctgtcgcaatgtcttcctcctgggcttcatcccagcc
aaggctgattctgtggtggtgttactctgcaggcagccatgtgccagccagagtagctta
aaagacatcaactgggacagctcgcagtggcaaccactgatccaggatcgctgctttttg
tcctggctggtgaaaatcccgtcagagcaggagcagcttcgagcccgtcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcccactgccaccttggaagac
ctggaaaaacctggtgtggatgaggaaccccagcatgtgctgctgcgctacgaggacgcc
taccagtaccaaaacatcttcggccctttggtcaaactggaggctgactacgacaagaag
ctaaaggagtcccagacccaagacaatataacagttaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgatgaaatctgcctgcggtacaagggagacctggccccactgtggaaaggcattggc
catgtcatcaaagtccctgacaactatggggatgaaattgccatcgagttgcggagcagt
gtcggagcacctgtagaaatcccccacaacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcaaagcgctctgaagacgtttgcagtggatgagacctccgtatct
ggctacatctaccacaaactgctgggccacgaggtggaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgctcagggcctgcctgacctcaatcactcacaggtgtacgct
gtgaagacggtgttgcagaggcccctcagtctgattcagggtcctcctggcactgggaag
actgtcacctctgccactattgtctaccacctgtcccgacagggcaacggcccagtcctg
gtgtgtgcccccagtaacatagctgtggaccagttgactgagaagatcgacaagactggg
ctgaaggttgtcaggctgtgcgccaagagccgagaggccattgagtcaccagtgtctttt
cttgctctacacaaccagatcagcaacatggacagcatgccagagcttcagaaactacag
cagctgaaggatgagactggtgagctgtcgtctgctgatgagaagcgctacagggctttg
aaacgcactgctgagagggagctgctcatgaatgcggacgtgatctgctgcacctgtgtt
ggggctggagatccacgtctggctaagatgcagttccgctccatcctgattgatgagagc
acccaggccaccgagccagagtgtatggtgcctgtggtgctgggagccaagcagcttatt
cttgtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcggctaaggca
ggcctgtcccagtccctgtttgaacgcctggtggttctgggtatccggccaatccgcctg
caggtccagtaccgcatgcacccagctctcagtgccttcccctccaacatcttctatgag
ggctctctgcagaacggtgtcaccgcagccgaccgcatcaagaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctctggaacctcctacctcaacaggacggaggctgccaacgtagagaagatcaccacc
aggctgctgaaggccggagccaaaccagaccaaatcggcatcatcaccccatacgagggc
cagcgctcttacctggtccagtacatgcagttcagtggctccctgcacaccaaactctat
cagcaagtggaaattgccagtgtggatgccttccagggcagagagaaggacttcatcatc
ctctcttgtgttcgtgccaatgagcatcagggcatcggtttcctgaatgaccctcgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcatcgtggggaaccccaaggcc
ctctccaagcaacctctgtggaacaacctgctgaacaactacaaggagcagaaggtgctg
gtggaggggcccctcaacaacctgagggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctgggggacgttttatgagcactgcgatgtacgatgctcgt
gaggccctcatccctggctccgcctacgaccgcagcaatgcagccggacgtccatccaac
atgtactttcagactcatgaccagattgggatgattggggcaggccccggtcatatggct
gctatgaatatccccatacccttcaaccttgtgatgccaccaatgcctccacccagctac
ttgggtcagaccaatggccctgctgcaggtcgtggggctatgaagggtaagcctgggcgt
ggcgggcggcagagggtccgtggctccggaaaccagggtgccagtcagggtaatggacca
aacagccaggccagccaggacggagcctcccagtccttctcccaggggccgctgacacag
ggctacatctccatgagccagccctctcagatgagccagccaggcctctcccagccagag
ctctcccaggacagctacctgggtgatgagttcaagtcccaaatcgatgtggctttgtcc
caggactcgacttaccagggtgaacgtgcgtaccagcatggcggggtgactggactgtca
cagtactaa
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