Longicatena caecimuris: L3BBH23_14170
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Entry
L3BBH23_14170 CDS
T07231
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lcg
Longicatena caecimuris
Pathway
lcg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L3BBH23_14170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcg03400
]
L3BBH23_14170
Enzymes [BR:
lcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L3BBH23_14170
DNA repair and recombination proteins [BR:
lcg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L3BBH23_14170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BCT44972
LinkDB
All DBs
Position
complement(1519486..1520421)
Genome browser
AA seq
311 aa
AA seq
DB search
MQFPLYDPMLIGTEQPPFDDDAYIYEIKMDGVRCLAYLYKDHVELINKRHLKLNSKFPEL
KSLYKQAKKPCVIDGELHVFQDGKSDFFAIQRRTLTSDPFRIRQHSKKFPAVFTAFDILN
LDGEDLCQKPLMERKKLLEKNIKESPICNISRYIEQEGKALFALTKQQQLEGIVAKRKES
LYQPSKRTKEWIKCKHLLEADFAVVGYIPKEHAMLSLVLAAYDNQKLQYCGHVTMGVSKD
YLFAHIKDTIPCPFSVLPDGNEDATWISPFLCGTVKFMEYTQSGGMRQPVFKGFREDKQP
IECLMHQLQEH
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttcccttatacgatcccatgttaatcggaacagaacagcctccatttgacgat
gatgcatatatttacgagattaaaatggatggtgttcgttgtttagcttatctttataaa
gatcatgtagaacttatcaataaacgtcatctaaaattaaattctaagtttcctgaacta
aaaagtttatataaacaagcaaagaagccttgtgtgatcgatggagaattgcatgttttt
caagatggaaaaagtgattttttcgccattcaaagaagaactcttacaagtgatcctttt
cgtatacgtcaacatagtaaaaagtttcctgctgtcttcactgcttttgatattttaaat
cttgatggtgaagatctttgtcaaaagcctttgatggaacgaaaaaaattgcttgaaaag
aacattaaagaatcccctatctgtaatatctctcgttacattgaacaagaaggaaaagct
ttgtttgctttaacgaagcaacaacaactggaaggaatcgtcgcaaagcgtaaagaaagt
ctgtatcaaccaagcaagcgcacaaaagaatggatcaaatgcaaacatctattggaagcc
gattttgctgttgttggttatattcccaaagaacatgccatgctctccttagtgctagct
gcttatgataaccaaaaactgcaatattgtgggcatgttaccatgggtgtatccaaagat
tatttatttgcccatatcaaagacacgattccttgccctttttctgtcctgccagatggc
aatgaggacgccacttggatatcgccgtttttatgtggcactgtgaaatttatggaatac
acacaaagcggaggtatgcgtcagccagtatttaaaggctttcgtgaggataagcaacct
atcgaatgtctaatgcatcaattacaagaacactaa
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