Leptothrix cholodnii: Lcho_2006
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Entry
Lcho_2006 CDS
T00681
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lcho_2006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_2006
Enzymes [BR:
lch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Lcho_2006
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Lcho_2006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
Methyltransf_28
Motif
Other DBs
NCBI-ProteinID:
ACB34273
UniProt:
B1Y1H4
LinkDB
All DBs
Position
2173723..2177190
Genome browser
AA seq
1155 aa
AA seq
DB search
MLLPNIAPGKRFAVSRPIGSADALLLARFAQARVASRQLLAVIVAEPADAQRLPDELAFF
APELRVAVFPDWETLPYDSFSPHQDLISERLATLWRVRSGEVDVVLLPATTALTRLAPPS
FLAGYTFHFKQKQKLDDAALKAQLTLAGYQHVSQVVSPGEYAVRGSLIDLFPMGSLVPYR
VDLFDNEVDSIRVFNPDSQRSLYPVPEVRLLPGREFPMDDAGRQAFRARWREKMDGDPSK
ARIYKDMASGIATAGIEYYLPLFFEQPATFFDYLGDAAALVLHGEVDEALARFWGETRER
HKFLRHDPERPVLPPEDIYLRQEEFFARCNQHAQLSIRGNDPVEWARPLPDLSVIRGGTD
PLQRLEQQLEKIRSQKNRLLIVAESAGRRESLLELLRDHRLEPPPIDGLSAFIASDHPYA
IATAPLAAGFFWTDATADFGIQFVTETELFDATPTARRRRKQEQTSDVEALIKDLSELKV
GDPVVHANHGIGRYQGLVSIDLGEGPTEFLFLEYADQATLYVPVSQLQLISRYTGVSAEE
APLHKLGSGQWEKAKRKAAEQVRDAAAELLNLYARRASREGFAFRFSPQDYEAFAASFGF
EETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPTT
LLAEQHYQTLADRFAQWPVKVAEISRFRSTKEVKATLDGLAAGTVDIVVGTHKLLSPDSK
FKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATA
PQRRLAIKTFVRNETGGTIREAVMRELKRGGQVYFLHNEVDTIENRRQKLEEMLPEARIA
VAHGQMPERELERVMRDFVAQRHNVLLCSTIIETGIDVPSANTIVISRADKFGLAQLHQL
RGRVGRSHHQAYAYLLVPDTEGLTKQAQQRLDAIQAMEELGSGFYLAMHDLEIRGAGEVL
GDNQSGNMMEVGFQLYNEMLAEAVRAMKAGEEPDLLSPTGFFGAATEVNLHAPALLPDSY
CGDVHVRLNLYKRLATVDRLDKIDSLLEEIVDRFGKLPAQGQTLFDLHRLRVQARPYGVV
KIDAGPAVMNIHFKPNPPIDPMRIIELVQKNRNVKLAGNDKLRIDRAYPDAKDRAQYVRD
VLRALGQPQAKAAAT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttccgaacatcgcacccggcaaacgctttgccgtttcacgcccgatcggctcc
gccgatgcgctcttgctggcccgcttcgcccaggcccgggtggccagccggcaactgctg
gccgtgatcgtggccgagcccgccgacgcccagcggctgcccgacgaactggctttcttt
gcccctgaactgcgcgtggcggtgttccccgactgggaaaccctgccctacgacagcttc
agcccgcaccaggacctgatctccgagcgcctggccacgctctggcgggtgcgctcgggc
gaggtcgacgtggtgctgctgcccgccaccacggcgctgacccggctggcgccgccgtcg
ttcctggccggctacaccttccatttcaagcagaagcagaaactcgatgacgccgcgctc
aaggcacagctgacgctggcgggctatcagcacgtcagccaggtggtgtcgccgggcgaa
tacgccgtgcgcggcagcctgatcgacctgttcccgatgggctcgctggtgccctaccgg
gtcgacctgttcgacaacgaggtcgattcgatccgcgtcttcaaccccgacagccagcgc
agcctctacccggtgcccgaggtgcggctgctgcccgggcgcgagttcccgatggacgac
gccgggcggcaggccttccgggcccgctggcgcgaaaagatggacggcgacccgagcaag
gcgcgcatctacaaggacatggcctcgggcatcgccaccgccggcatcgagtactacctg
ccgctgttcttcgagcagccggccaccttcttcgactacctcggcgacgccgccgcgctg
gtgctgcacggcgaggtcgacgaggcgctggcgcgtttctggggcgaaacccgcgagcgc
cacaagttcctgcgccacgaccccgagcggccggtgctgccgcccgaggacatctacctg
cgccaggaagaattcttcgcgcggtgcaaccagcacgcccagctgtcgatccgcggcaac
gaccccgtcgaatgggcccggccgctgcccgacctgagcgtgatccgcggcggcaccgat
ccgctgcagcgcctggagcagcagctcgagaagatccgcagccagaagaaccggctgctg
atcgtggccgaaagcgccggccggcgcgagagcctgctcgaactgctgcgcgaccaccgg
ctggagccgccgccgatcgacggcctgtcggccttcatcgccagcgaccacccgtacgcg
atcgccaccgcgccgctggccgccggtttcttctggaccgacgcgacggccgacttcggc
atccagttcgtcaccgaaaccgaactcttcgacgccacgcccaccgcacgccggcgccgc
aagcaggagcagaccagcgacgtcgaggcgctgatcaaggacctgtcggagctgaaggtc
ggcgacccggtggtgcacgccaaccacggcatcggccgctaccaggggctggtcagcatc
gacctgggcgaggggccgaccgagttcctgttcctcgaatacgccgaccaggccacgctc
tacgtgccggtgtcgcagctgcagctgatcagccgctacaccggcgtcagcgccgaagag
gcgccgctgcacaagctcggttccggccagtgggaaaaggccaagcgcaaggcggccgag
caggtgcgcgacgccgccgccgagctgctgaatctgtacgcgcgccgcgcttcgcgcgaa
gggtttgcattccgtttctcgccgcaggattacgaggcgtttgcggccagcttcggcttc
gaggaaaccgccgaccagaacgccgcgatccacgccgtcatccaggacatgatcagcccc
agaccgatggatcggctggtctgcggcgacgtcggtttcggcaagaccgaggtggccttg
cgcgccgccttcgtggcggtcaccggcggcaagcaggtggcgctgctcgcgccgaccacg
ctgctggccgagcagcactaccagacgctggccgaccgcttcgcgcagtggccggtcaag
gtggccgagatcagccgcttccgctcgaccaaggaggtcaaggccacgctcgacggcctg
gccgccggcacggtcgacatcgtggtgggcacgcacaagctgctgagcccggactcgaag
ttcaagaacctgggcctcctgatcatcgacgaggaacaccgtttcggcgtgcgccacaag
gagcagatgaaggcgctgcgcgccgaggtcgacgtgctcacgctcaccgccacgccgatc
ccgcgcacgctgggcatggcgctcgaagggctgcgagatctgagcgtgatcgccaccgcg
ccgcagcggcgcctcgcgatcaagaccttcgtgcgcaacgagaccggcggcacgatccgc
gaggccgtgatgcgcgagttgaagcgcggcggccaggtctacttcctgcacaacgaggtc
gacacgatcgagaaccggcgccagaagctcgaggaaatgctgcccgaggcgcgcatcgcg
gtcgcccacggccagatgcccgagcgcgagctcgagcgcgtgatgcgcgacttcgtggcc
cagcgccacaacgtgctgctgtgctcgaccatcatcgagaccggcatcgacgtgccgagc
gccaacaccatcgtcatcagccgcgccgacaagttcggcctggcgcagctgcaccagctg
cgcgggcgcgtcggtcgcagccaccaccaggcctacgcctacctgctggtgcccgacacc
gagggcctgaccaagcaggcgcagcagcgcctggacgccatccaggcgatggaggaactg
ggttcgggcttctacctggcgatgcacgacctggagatccgcggcgccggcgaggtgctg
ggcgacaaccagagcggcaacatgatggaggtcggcttccagctctacaacgagatgctg
gccgaggcggtgcgggcgatgaaggccggcgaggagcccgacctgctgtcacccaccggc
ttcttcggcgccgccaccgaggtcaacctgcacgcccccgcgctgctgcccgacagctac
tgcggcgacgtgcacgtgcgcctgaacctctacaagcgcctggccacggtcgacaggctc
gacaagatcgacagcctgctcgaggagatcgtcgaccgcttcggcaagctgcccgcccag
ggccagacgctgttcgacctgcaccgcctgcgggtgcaggcgcggccctacggcgtggtc
aagatcgacgcgggcccggcggtgatgaacatccatttcaagccgaacccgccgatcgat
ccgatgcgcatcatcgagctggtgcagaagaaccgcaacgtcaagctcgccggcaacgac
aagctgcgcatcgaccgggcctaccccgacgccaaggaccgggcgcagtacgtgcgcgac
gtgctgcgcgcactcggccagccgcaggccaaggcggccgccacctga
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