Leuconostoc citreum: LCK_00366
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Entry
LCK_00366 CDS
T00663
Name
(GenBank) Putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lci
Leuconostoc citreum
Pathway
lci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCK_00366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lci03019
]
LCK_00366
03009 Ribosome biogenesis [BR:
lci03009
]
LCK_00366
Enzymes [BR:
lci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCK_00366
Messenger RNA biogenesis [BR:
lci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCK_00366
Ribosome biogenesis [BR:
lci03009
]
Prokaryotic type
rRNA helicases
LCK_00366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Wbp11
Motif
Other DBs
NCBI-ProteinID:
ACA82199
UniProt:
B1MXE7
LinkDB
All DBs
Position
377465..379033
Genome browser
AA seq
522 aa
AA seq
DB search
MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL
EHIDLSNKNIQALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQNLKSHP
QILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPADRQTLLF
SATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPK
LAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAA
RGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAVEDLTKK
RMTPLEPASLKEARIGKIKNAADEVHNIVKKTDVSEIQTEVDKLTNQYSSEELAAALLSS
VADLEKQNTPVEITRERPLPRRRNGSGSRNGGGRGGDRRGNGGGYRGGNRSGGSRNGGGN
RERRGNSERRFGDYKRRDGRSNEGRSNNSSRQRREFTVREKD
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggtttgtcacaagatattttggatgctattgcaacacatggc
tatgtggaagcaacacccattcaagaaaaaacaattccgctaacattagcgggtaaagat
gttattggacaagcgcaaacaggaactggaaaaacagctgccttcggtttgccaatatta
gaacacattgatttaagtaataaaaacattcaagctttaattgtttcacctacacgtgaa
ttagcaattcagacggctgaggaacttaaaaaattaggccgtgataagcacgttgatgtg
caagttgtctttggtggtgcagatattcgtcgtcaaattcaaaacttgaaatcgcatcca
caaattcttgtcggtacaccaggccgtttgcttgatcatattaaccgtaagacagttaaa
attgataatgttaagacattggtgttggatgaagctgacgagatgttaaatatgggattc
ttggatgatattgaatcaattatcaagaacacaccagcagatcgtcaaacattgctattc
tcagcaacaatgccaccagctattaagcgtattggtgtcaaattcatgactaatcctgag
catattcaaatcgaagcaaaagaattgacaactgatttagttgaccagtattttgtacgt
atgcgcgagaatgaaaagtttgatacaatgacacgcatctttgatgtacaagcacctaag
ttggcgattgtgttcggtcgtaccaagcgtcgtgttgaagaattatcacgtggtctagaa
gcacgtggctatcgtgcagctggcttgcacggtgatttgacgcaacaaatgcgttcacgc
gttttggcacagtttaaatcacacgaaatcaatattctggtagcaactgatgttgctgca
cgtggtttggatgttaaggatgttacacatgtttataactttgatattcctcaagatcct
gaatcatatgttcaccgtattggccgtacaggtagagctggcgctaaaggcgtttcagta
acactagttgcaccaaatgaaatggattaccttcgcgcagttgaagatcttaccaagaaa
cgtatgacaccattggagccagcttctttgaaagaagcacgtattggtaaaattaaaaat
gcggcagatgaagtgcataatattgtcaaaaaaacagatgttagcgaaattcaaacagaa
gttgataagttgacaaaccagtattcttcagaagaattagcggcagcacttttgtcatct
gtagcagatttggaaaagcagaatacaccagttgaaattacccgcgaacggccattacca
cgccgtagaaatggtagtgggtcacgtaatggtggtggccgtggtggcgatcgtcgtggc
aatggcggtggttatcgtggtggtaatcgcagtggcggctcaagaaacggtggtggcaac
cgtgagcgtcgtggtaacagtgaacgtcgttttggtgattacaagcgtcgtgatggtcgt
tcaaatgagggacgatcaaataattcatcacgccagcgtcgtgaattcactgtccgtgaa
aaagattaa
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