Lysobacter ciconiae: INQ41_07100
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Entry
INQ41_07100 CDS
T08092
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lcic
Lysobacter ciconiae
Pathway
lcic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
INQ41_07100 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcic03400
]
INQ41_07100 (ligD)
Enzymes [BR:
lcic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
INQ41_07100 (ligD)
DNA repair and recombination proteins [BR:
lcic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
INQ41_07100 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QOW18492
UniProt:
A0A7S6UDX7
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All DBs
Position
complement(1552832..1555330)
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AA seq
832 aa
AA seq
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MSLTEYRRKRQFNRTREPEPGKPLTPGDRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWSTQYDAEAQLAK
GHLRFQLFGEKLKGGWHLVRSGKAARQPQWLLFKDDDAYASDLEADDLLGDVTPAPAADV
KRAGAGKTGKKGLLAPPEPRATSTRAAKKKWATAAAKLPGAKKATLDGGAFEPQLAKLGD
APPIGERWLHEVKWDGYRLVATIVAGRVRLWSRNALEWTGKVPEVVQALEQLGLRSAALD
GELIAGTGTQQDFNVLQATLSGEQQGALSYVLFDLLHLDGIAIDRAPLLERKRLLEAVLA
DAPPSLAYSSHIPVDGAAAFALAGEQHFEGIISKRADGVYHPGRGDDWRKTKSIQSDEFA
VVGTLPPKGSRKGFGALLLASPDGAGGWSYAGRVGSGFSDRQLDEISAHIGNAGSATPTV
EVPASQKGPLRAATWFNPLFVAEVYLRGISGQGLLRQPSLKTIRLDKDPGDLMSSDKSAP
KPSAEPVKISSPTKLIYPDARITKADVAAYYEQVMDYLLPEVINRPLSVIRCPSGTAKAC
FFQKHHTAGMERVDLVRLKEEAGTNANYLVVRDAAGLMELVQFNALEFHPWGSFADNPDV
ANRVVFDLDPGPDVPFAEVKQAARDVRKLLQQAGLVSFLRTTGGKGLHVVVPLNPGCEWE
LVKHFAHGFADALAESEPERFIAVSTLKLRPGKIFIDYLRNSRGATAIASYSLRAREGAP
VALPLTWAQLGSLKAGNEFDLRSVPPRLRRRRKDPWEGINSVQQDLSRWSAG
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcaccgagtaccgcaggaagcggcagttcaacaggacccgcgagcccgagccg
ggtaaaccgttgacgccgggtgaccgggcgattttcgtcgtccagctccatcacgcctcg
cgccgccattacgacttccgcctgcaggtgggcgatgcgctgaaatcctgggccgtgccc
aagggccccagctacgaccccaaggtcaagcgcatggcggtcgaggtggaggaccacccg
gtcgactacgcgagctttgagggcgaaattcccaagggcgagtacggcggcggccacgtg
gcgcagttcgaccatggcgtgtggagcacgcagtacgacgccgaagcccagctcgccaaa
ggccacctgcgcttccagctgttcggcgagaagctcaagggcgggtggcatctggtgcgt
tcgggcaaggcggcccggcagccgcagtggctgctgttcaaggacgatgacgcctacgcc
tccgatctggaggcggacgaccttctgggcgatgtcacgcccgcgccggccgccgacgtc
aaacgcgccggtgcaggcaagacgggcaagaagggcctgctggcgcctccggaaccgcgc
gcgacgtcaacacgtgcggcgaaaaagaaatgggcgacggcggcggccaaactgccgggc
gcgaaaaaggccacgctcgacggtggcgcgttcgagccgcaattggccaagttgggcgat
gcgcctcccattggtgagcgctggttgcacgaagtcaaatgggacggctaccggctggtg
gcgaccatcgtcgccgggcgggtgcggctgtggtcccgcaacgcactggagtggacgggg
aaggtccccgaggtggttcaggccctggagcaactggggctgcgcagtgcggcgctggac
ggtgagctgatcgccggcaccggtacccagcaggacttcaatgtcctccaggcgacgctg
tcgggagagcagcagggcgccctgagctacgtcctgttcgacctgttgcacctagacggg
atcgccattgaccgggcgccgctgctggagcgcaagcgtttgctggaagccgtgctggcc
gacgctccgccgtcgctggcgtacagctcgcacatcccggtcgatggtgccgccgcattt
gccctggccggcgaacagcacttcgaaggcatcatttccaagcgcgccgacggcgtctat
caccccggtcgcggcgacgactggcgcaagaccaaatcgatccagagtgacgagttcgcc
gtggttgggacgctgccccccaagggctcgcgcaagggctttggcgcgcttttgctggcg
agccccgacggagcagggggctggtcctacgccggtcgcgtgggcagcggtttcagcgac
cgccagctcgacgagatcagtgcccatatcggcaacgccggcagtgcgacgcccaccgtg
gaggtgccggcgagccagaaggggccgctgcgcgcggcgacctggttcaacccgctgttt
gtcgccgaggtctacctgcggggcatcagcggccagggcctgctgcggcagccttcgttg
aagaccattcgactggacaaggatcccggtgacctgatgagcagcgacaagtccgccccc
aagccgtccgccgagccggtcaaaatcagcagcccgaccaagctgatctatcccgacgcg
cgcatcaccaaggccgacgttgcggcgtactacgagcaggtcatggactacctgctgccg
gaggtcatcaatcggccgctgtcggtgatccggtgcccgtccgggaccgccaaggcgtgc
ttcttccagaaacaccacaccgcgggcatggagcgcgtggacctggtccgcctgaaggag
gaagcgggcaccaacgccaactacctggtggtccgcgatgccgccgggttgatggaactg
gtccagttcaacgccctggagttccacccctggggatcgttcgccgacaacccggacgtg
gccaaccgggtggttttcgatctcgatccgggccctgacgtcccgtttgccgaggtcaag
caggccgcccgcgacgttcgcaagctgctgcaacaagccgggctggtaagtttcctgcgc
accaccggcggcaaggggctgcacgtggtggtaccgctgaatccggggtgcgagtgggag
ctggtcaagcacttcgcgcacgggtttgccgatgccctggccgagtccgagcccgagcgc
ttcattgcggtttcaaccttgaaattgcgtccgggcaagatcttcatcgattacctgcgc
aacagtcgcggcgcgacggcgatcgccagttactcgctgcgggcccgggagggagcgccg
gtcgccttgccactgacatgggcgcaactggggtcgctcaaggccggcaacgagttcgat
ctgcgcagcgtaccgccgcgtctgcggcgcaggcgcaaggacccctgggagggcatcaac
tccgtccagcaggacctgtcgcgctggtcggcaggctga
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