Lichenicola cladoniae: HN018_01750
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Entry
HN018_01750 CDS
T07054
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lck
Lichenicola cladoniae
Pathway
lck03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HN018_01750 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lck03400
]
HN018_01750 (ligD)
Enzymes [BR:
lck01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HN018_01750 (ligD)
DNA repair and recombination proteins [BR:
lck03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HN018_01750 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKE88940
UniProt:
A0A6M8HF18
LinkDB
All DBs
Position
complement(412030..414576)
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AA seq
848 aa
AA seq
DB search
MRDFTRTPEPGPGPSKGASAEGKPLFVVQKHDASRLHWDFRLEHGGVLWSWAVPKGPSLD
PHHKRLAMHVEDHPVDYAAFEGTIPKGNYGAGTVEIWDRGTWAPINGDAEAALAKGEFKF
RLDGERLQGGFVLIRLKPRPREKSESWLLIKEHDEFEREGADAAALEERKLGAAKPARAS
KKKAPAKRKGDAELPETQAPQLAQLVRTPPAGEGWVSEVKFDGYRMLARKDGDQVRIITR
NGLDWTERLPDLAAAVAAMEPRTLMLDGELVALGKNGISSFAGLQDAFSTGRTRSLSYYV
FDLLHLDGTDLRPQPLSARRTALEQLMQDVPKAGPLRFSEHLESDTARVKQEVCAIGLEG
IICKRLDAPYRPGRGGDWVKVKCENREEFIILGYTPPAGSRQGLGSLQLGFRDDGGQLYF
IGGCGTGFSARILRTLTERLEVLRIDTPLSMLGTEKPQRDTIWVKPELVAELTYAGFTGG
GMLRHASFQGLREDKPADEVVRPIPPSDAKRTQLGTAEKQPGPSRESKADPKPTASRATI
VVARKTERGAAEIGGVRISHADRPLWPEDANGPALTKQDLALYWQTVGEQAAPGIVGRPL
AFVRCPDGIGGEQFFQKHLGRGMPEALHEAEADGAPYVAFADASGLVAAAQIAAVELHSW
GSSEADPVHADRLVFDLDPGDGVTMPTIVQAAREVKQRLEAAGLAAFCRTSGGKGLHVVA
PVRTKAGWDQVRAWCRAFAEAMEADAPGRFISTTRKKDRDGKILVDWLRNGLGSTAIASF
SPRARPGAGVATPLAWREVTETLDPQVFNLRTIPARLARQKADPWEGFADEARDLPGISD
KPARKKKS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacttcacgcgcaccccggagccgggtccggggccttcgaagggggcatccgca
gagggtaaaccgttgttcgtggtgcagaagcacgacgcgagccgcctgcactgggacttc
cggctggagcatggcggcgtgctgtggagctgggcggtgccgaaaggtccgtcgctggac
ccgcaccacaaacggctggcgatgcatgtcgaggatcatccggtcgactacgcggcgttc
gagggcaccatcccgaagggcaactacggcgccggcacggtcgagatctgggatcgcggc
acctgggcgccgatcaacggtgatgccgaggcggcgctcgccaagggcgagttcaagttc
cggctggacggcgagcgcctccagggtggcttcgtgctgatcaggctgaagccccggccg
cgcgagaagtccgaaagctggctgctcatcaaggagcacgacgagttcgagcgcgaggga
gcggatgccgccgcattggaagaacgcaagctcggtgctgccaaaccggcgagagcgtcg
aagaagaaggcacccgcgaaacgcaagggggatgccgagcttccggagacccaggcgcca
cagctcgcccagctggtgcgcaccccacccgccggcgaaggctgggtcagcgaggtcaag
ttcgacggctatcgaatgctggcgcgcaaggacggcgaccaggtgcgaatcatcacgcgt
aatggcctcgactggaccgaacgcctgcccgacctggccgccgccgttgccgcgatggaa
ccccggacgctgatgctggacggcgaattggtcgcactcggcaagaacggcatctccagc
ttcgccgggctgcaggacgcgttctcgaccggacggaccaggtccttgtcctactacgtg
ttcgacctgctgcatctggacgggaccgatcttcggccgcagccgctttcggcacgtcgc
acggcgctcgagcagctgatgcaggacgtgcccaaggcggggccgctgcggttcagcgag
catctggagtcggacaccgcgcgggtgaagcaggaggtgtgcgcgatcggactggaaggg
atcatctgcaaacggctcgatgcgccataccggcccggtcgcggtggcgactgggtcaag
gtcaagtgcgagaaccgcgaggagttcatcatcctcggctacacgccgccggccggctcg
cgccaggggcttgggtcgttgcagctcgggtttcgcgacgatggcggccagctctatttc
atcggcggctgcggcaccggattttccgcgcgcatcctgcgcacgctgaccgaacggctt
gaggtgctgcggatcgacacgcccttgagcatgctcggcaccgagaagccgcagcgcgac
acgatttgggtaaagccggagctggtggccgagctgacgtatgcgggctttactggtggc
gggatgttgcggcacgcgagcttccaggggctgcgcgaggacaagccggccgacgaggtg
gtgcggccgatcccaccctccgatgccaagcggacccagcttgggactgcagaaaagcag
ccggggccgtcgagagagagcaaggccgacccgaagcccaccgccagccgcgccaccatc
gtcgtcgcacgcaagaccgagcgcggtgccgccgagatcggcggtgtccggatcagccat
gccgaccggccgctctggccggaagatgcgaatggtcccgcgctgaccaagcaagatctg
gcactgtattggcagacggtcggcgaacaggctgcgcccggcatcgtcggccgtccattg
gccttcgtgcgctgcccggacgggatcggcggcgagcagttcttccagaagcatctgggg
cgcggcatgcccgaagcgctgcacgaggcggaagcggatggggcgccctacgtggcgttc
gccgacgcgtcggggctcgtcgcggcagcacagatcgctgcggtcgagttgcatagctgg
ggatcgagcgaggccgatccggtccatgccgatcggctggtattcgacctcgatcccggc
gacggggtgaccatgccgaccatcgtgcaggcggcccgcgaggtgaagcagcgcctcgag
gcagccggccttgccgcgttctgccgcacctccggcggcaaggggctgcatgtggtggcg
ccggtgcgaaccaaggcaggctgggaccaggtgcgggcctggtgccgggcattcgcggag
gcgatggaagcagatgcgccgggccggttcatctccaccacccgcaagaaggaccgcgac
ggcaagatcctggtcgactggttgcgcaacgggctcggctcgacggcgatcgcctcgttc
tcaccacgtgcgcgcccgggagccggcgtcgccacgccgctggcctggcgcgaagtgacc
gagacgctcgatccgcaggtgttcaacctgcgcacgatcccggcccggttggccaggcag
aaagccgatccctgggaaggtttcgccgacgaggcgcgcgacctgccggggatttccgat
aaacccgcccgcaagaagaagagctga
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