Lichenicola cladoniae: HN018_08845
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Entry
HN018_08845 CDS
T07054
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lck
Lichenicola cladoniae
Pathway
lck03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HN018_08845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lck03400
]
HN018_08845 (mfd)
Enzymes [BR:
lck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HN018_08845 (mfd)
DNA repair and recombination proteins [BR:
lck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HN018_08845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QKE90142
UniProt:
A0A6M8HP67
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All DBs
Position
1908840..1912421
Genome browser
AA seq
1193 aa
AA seq
DB search
MRYADAPGGRGGGTDAVPVRVEALSADGGGAVDATTTIWGVPEGYDAILLARRQTQFGGE
HDGPLLHVARDDTNLARLADLLAYVRPEAEILRFPAWDCLPYDRVSPNPAIVSERVATLT
RLLEPTTSPRIVLTTVNALVQRVPPRKAFAGQSLSVNSGESLDVAFLIEVLVANGYNRTD
TVMEPGEFATRGGIVDIFPSGEPDPIRLDLFGDEVENIRRFDPATQRSTDKLDRLVLRPV
SEISFDADSVSRFRTGWREQFGPEAANDPIYHSVSDARRHSGVEHWMPLFHEQIETLIDY
LPGVSLSMDHQVDEVLSGRLEMIADHADARAMPTRDGEVPYRALPPELLYLDRAAWDAML
AHLPVLSFSPFAKPDGAGGFEAGGRPGIMFARSLPAGSRETVFQMLGDQVGKWAKGQKRR
CFVTAWTRGSRERIGTLLREAGLDVEAINDWASTAKLKPGRIGLLTLGLERGFVAEDMAL
VSEQDLLGERISRPPRRRKRADQFIAEATEIAEGDLVVHQDYGIGRYDGLETIGIVRAGS
QSVIGTAPHDCLRLIYDGNEKLFLPVENIELLSRFGSEQNGVALDKLGGASWQSRKSKMK
QRIRDMAGELIRTAAARQLRDAPSLAPAEGEWDEFCSRFPFVETEDQARAIADVLEDLAA
GRPMDRLICGDVGFGKTEVALRAAFVAAMSGSQVAVVVPTTLLARQHHRTFTARFAGLPV
RVEQLSRMVNAKDAAAVKRGVTDGTVNIVIGTHALLAKGIEFADLGLLIVDEEQHFGVSH
KEKLKALREDVHVLTLSATPIPRTLQLALTGVREMSLIATPPTDRLAVRTFIMPFDSVVI
REALQRERFRGGQVFCVVPRIEDLDRMAARLHEIVPDAKLVQAHGRLAPTELERVMTEFG
DGKYDILLSTNIVESGLDMPAVNTLVIHRADLFGLGQLYQLRGRVGRGKQRGYAYLTWPQ
QHRLSASAEKRLEVMQTLDQLGAGFTLASHDLDLRGAGNLLGDEQTGHIREVGIELYQQM
LEDAVSDLRREKGKRKAEDRDWTPNIVLGLPVLIPETYVPDLPVRLGLYRRIGSLPGDAE
TEAMAAELVDRFGKLPDEVENLLQVVTLKRMCRMAGVEKLEAGPKGMVVQFRGNNFSNPA
GLVAWIGAKGSDMRLRPDHKLAIAREMTTAARIKLARDVVGNLNRLADQAKAA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgcgatacgccgatgctccgggcggtcgaggcggcggcacggacgcggtccctgtccgg
gttgaagcgttgagcgcggatggcggcggcgcggtcgacgcgacgacgaccatctggggt
gtgcccgagggctacgacgcgatattgctcgcacgccggcagacgcagttcggcggcgag
catgacggaccgttgctgcatgtcgcgcgcgacgacaccaacctggcccggctggccgac
ctgctggcctatgtccggccggaagcggaaatcctgaggttcccggcctgggactgcctg
ccgtacgaccgcgtctcgcccaacccggcgatcgtgtccgagcgggtcgcgacgctgacg
cgcctgctggagccgaccacctcgccgcgcatcgtgctgaccacggtcaatgcgctggtg
cagcgggtgccgccgcgcaaggcgttcgcggggcagtcgctgagcgtgaactcgggcgag
agcctggacgtcgccttcctgatcgaggtgctggtcgccaacggctacaaccgcaccgac
acggtgatggagcccggcgagttcgccacgcgcggcggcatcgtcgacatctttccgtcc
ggcgagcccgacccgatccgcctcgatttgttcggggacgaggtcgagaacatccggcgt
ttcgatccggccacccagcgctcgaccgacaagctcgaccggctggtgctgcggccggtg
tccgagatctcgttcgatgccgacagcgtatcgcggttccgcaccggctggcgcgagcag
ttcgggccggaagccgccaacgatccgatctatcacagcgtgtccgacgcgcgccggcat
tccggcgtcgagcactggatgccgctgttccacgagcagatcgagacgctgatcgactac
ctgcccggcgtgtcgctgagcatggaccatcaggtcgacgaggttttgtccggccggctc
gagatgatcgccgaccatgccgacgcacgggcgatgccgacccgcgacggcgaggtgccg
taccgggcgctgccgcccgagctgctctatctggatcgcgccgcctgggacgccatgctg
gcgcacctgccggtgctgtcgttcagtccgttcgcgaagcccgacggcgccggcggcttc
gaggcgggcgggcgtcccggcatcatgttcgcgcgcagcctgccggccggcagccgcgag
accgtattccagatgctgggcgaccaggtcgggaaatgggccaagggccagaagcggcgc
tgcttcgtcaccgcctggacccgtggctcccgcgagcgcatcggcacgctgctgcgcgag
gccggcctggatgtcgaggcgatcaacgactgggcctccaccgccaagctgaagccgggc
cggatcggcctgctgacgctcggcctggaacgcggcttcgtcgccgaggacatggcgctg
gtgtccgagcaggatctgctcggcgagcggatctcgcgtccgccacgccgccgcaagcgc
gccgaccagttcatcgccgaggccaccgagatcgccgagggcgacctcgtggtgcaccag
gattacggcatcggccgctatgacgggctggagactatcggcatcgttcgcgccggcagc
cagagcgtgatcggcaccgccccgcacgactgcctgcgattgatctatgacggcaacgag
aagctgttcctgccggtcgagaatatcgagctgctgagccggttcggctccgagcagaac
ggcgtggccctcgacaagctcggcggtgcctcctggcagtcgcgcaagtccaagatgaag
cagcgcatccgcgacatggcgggcgagctgatccggaccgccgcggcccgccagctgcgc
gatgcgccgagcctggcgccggcggaaggggagtgggacgagttctgctcgcgcttcccg
ttcgtggagaccgaggaccaggcgcgggcgatcgccgacgtgctcgaggatctggcggcc
ggacgtcccatggaccggctgatctgcggcgatgtcggctttgggaagaccgaggtggcg
ctccgggccgccttcgtggcggcgatgtccggctcgcaggtcgcggtggtggttccgacc
accctgctggcccgccagcatcatcgcaccttcaccgcacgcttcgcaggcctgccggtc
cgcgttgaacagctgtcgcgcatggtcaatgccaaggacgccgccgccgtgaagcgcggc
gtgaccgatggcaccgtgaacatcgtgatcggcacgcatgccctgctcgccaagggcatc
gagttcgccgatctcggcctgctgatcgtcgacgaggagcagcatttcggcgtctcgcac
aaggagaagctgaaggcgctgcgcgaggacgtgcacgtgctgacgctgtccgcgacgccg
atcccgcgcacgctgcagctggcactgaccggcgtgcgggaaatgagcctgatcgccacc
ccgccgaccgaccggctggcggtgcgcaccttcatcatgccgttcgactccgtggtgatc
cgcgaggcgttgcagcgcgagcggttccgtggcggccaggtcttctgcgtggtgccacgc
atcgaggatctcgatcgcatggccgcgcgcctgcatgagatcgtgccggacgccaagctg
gtgcaggcgcatggacgattggcgccgaccgagctcgaacgggtgatgaccgagttcggc
gacggcaagtacgacatcctgctctccaccaacatcgtcgagagcgggctcgacatgccg
gcggtgaacacgctggtgatccatcgtgccgacctgttcgggcttgggcagctctaccag
ctgcgcggacgggtcgggcgcggcaagcagcgcggctacgcctatctcacctggccgcag
cagcatcgcctgtcggcttcggccgagaagcgcctcgaggtgatgcagacgctcgaccag
ctcggcgccggtttcactctcgccagtcacgacctggatcttcgcggcgccggcaatctg
ctcggcgacgagcagaccgggcacatccgcgaggtcggcatcgagctgtaccagcagatg
ctcgaggatgcggtgtcggacctgcggcgcgagaagggcaagcgcaaggccgaggatcgc
gactggacacccaacatcgtgctcggattgccggtgctgatccccgaaacctacgtgccg
gacctgccggtcaggctgggcctctatcgccggatcggcagcctgcccggcgacgccgag
accgaggcgatggccgccgaactcgtcgatcgtttcggcaagcttcccgacgaggtcgag
aacctgctgcaggtggtgacgctgaagcggatgtgccggatggcgggcgtcgagaagctg
gaggccgggccgaaaggcatggtggtgcagttccgcggcaacaacttcagcaacccggcc
gggctggttgcctggatcggcgccaagggcagtgacatgcgcctccgcccggaccacaag
ctggcgatcgcacgcgagatgaccacggccgcacggatcaagctggcccgcgacgtggtc
ggcaacctgaaccggctggcggaccaggcgaaggccgcctga
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