Lacticaseibacillus paracasei LOCK919: LOCK919_1483
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Entry
LOCK919_1483 CDS
T02729
Name
(GenBank) Ribonuclease J1, endonuclease and 5' exonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lcl
Lacticaseibacillus paracasei LOCK919
Pathway
lcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK919_1483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcl03019
]
LOCK919_1483
Messenger RNA biogenesis [BR:
lcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOCK919_1483
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AGP68180
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Position
complement(1439734..1441416)
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AA seq
560 aa
AA seq
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MKLNIKNNETAVFAVGGLGEIGKNMYGVQFQDEIIVIDAGIKFPEDDLLGIDYVISDYSY
LVQNKDKIKALVITHGHEDHIGGIPYFLQQVPNVPIYAGPLAAALIRGKLEEHGLLRTTK
LTEINEDTVLKFKKLSVEFFRTTHSIPDTLGIAVHTPQGIVIQTGDFKFDLTPVGDQPSP
NFQKMCRFAEEGVLVLMSDSTNAEVPTFTKSERFVGKSIRHIFDRIDGRIIFATFASNIS
RIAQAADAAMAHGRKIAVFGRSMETAMVNGRELGYLNIPDDVLIDAHQLNSMPADKVMIL
CTGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTVSVNHVINQLSEAGAEVI
HGKVNNVHTSGHGGQEDQKLMLRLIKPKFFMACHGEYRMQKIHCELAQQCGVPEKNCYIM
ENGDVLALTQDSARIAGHFPAGDVYIDGNGVGDIGNAVIRDRRMLSEEGLVVVVATINMQ
KQAVLAGPDLLSRGFIYMRESGELINQAQRRVYRTIKSTFSSSEKVTEASLKDAITSNLQ
EFLFDKTERHPVILPMLILL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaatattaagaataacgaaaccgccgtctttgctgtcggcggtttaggtgaa
attgggaagaacatgtacggggttcaattccaagatgaaatcatcgtgattgatgcaggg
atcaagttccctgaagatgatctgcttgggattgattatgtcatttccgattattcctac
ttggttcaaaacaaagacaagatcaaagcactggttattactcacggacatgaagatcat
attggtggtattccctacttcttacagcaggtaccgaatgtgccaatttacgctggtccg
ttagcagcagctttgattcgtggcaaacttgaagaacacggtttgttacgcactaccaaa
ttaactgaaattaacgaagacaccgtgttgaagttcaaaaaacttagtgttgagttcttc
cgcacgacccacagtattccggatacgctgggcatcgcggttcatacaccgcaaggcatc
gtcattcaaaccggggacttcaagtttgatctcacgccggttggcgatcagccatcccct
aacttccaaaaaatgtgccgattcgccgaagaaggcgtgctggtactgatgtcggattcg
accaacgcggaagtaccaacatttactaagtcagaacgatttgttggcaagtcaattcgc
cacatttttgatcgaattgatggtcgcatcatatttgccacctttgcgtcaaacatttca
cggatcgcccaagcagctgatgcggcaatggcacacggtcgtaaaattgctgtttttggc
cgttcaatggaaactgcgatggtcaatggccgcgaacttggctaccttaacatccctgat
gacgtcttgattgatgcccatcaacttaattcgatgccagctgataaagtgatgatcctc
tgtaccggttcacaaggcgaaccaatggcagcgctgagccgaattgctaatggcacgcat
cgacaaatcagtattcaacctggggataccgtcatcttctccagtaatccgattcccggc
aatactgtcagtgttaatcacgtgatcaatcagctaagtgaagctggtgccgaggtcatc
catggcaaggtcaacaacgtccacacttccggtcacggcggtcaagaagaccagaagctt
atgttgcggctaatcaagccaaaattctttatggcttgccatggtgaatatcggatgcaa
aagattcattgcgaacttgcccaacaatgcggcgtccctgaaaagaattgctacattatg
gaaaatggcgatgtattagctcttacgcaagatagtgctcgaattgccggtcacttccct
gctggcgatgtttacattgatggcaatggtgtcggcgacatcggaaatgctgtcattcgt
gatcggcgcatgttgtctgaggaaggcttggttgtggtcgttgctacgatcaatatgcaa
aaacaagcggtcttagctggtcctgatctgctttctcgcggcttcatctatatgcgtgaa
tccggcgagttgattaatcaggctcagcggcgcgtctatcgcaccattaagtcaaccttc
tcaagcagtgaaaaggtgacggaagctagcttaaaagatgcaatcaccagcaacttgcaa
gaatttttgttcgacaaaacagaacgacacccggttattttaccgatgctgattttgctc
taa
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