Latimeria chalumnae (coelacanth): 102352262
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Entry
102352262 CDS
T02913
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03013
Nucleocytoplasmic transport
lcm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102352262 (UPF1)
03015 mRNA surveillance pathway
102352262 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102352262 (UPF1)
Enzymes [BR:
lcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102352262 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102352262 (UPF1)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102352262 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102352262 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102352262
NCBI-ProteinID:
XP_014352494
Ensembl:
ENSLACG00000008482
LinkDB
All DBs
Position
Un
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSDFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGAADDSMAKTSQLLAELNFEEEDEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLMMPPMPPPGYFGQANGPAAGRGALKGKTSRGGRQRNRVLGNQGNGQSNMPNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcttacgggccgagctcacagactcttaccttcctggacacggaggaa
gcggagctgctgggggccgatacccagggttccgatttcgagttcacggatttcactctg
ccgagccagacgcagacgcagggccaaacccagagccaactcgacaaccaggtgaatggg
ccagatggtgtcctacagaatggtgcagcagatgattcaatggccaaaaccagccagctg
ttggcagaacttaattttgaagaggaagatgaagatacttattataccaaggatctgcct
atacatgcttgcagttattgtgggatacatgatccagcttgtgttgtttactgcaatacc
agtaagaaatggttctgcaatggacgtggaaacacctctggaagccatattgtaaatcat
cttgttagagcgaagtgtaaagaagtgactcttcacaaggatggaccactaggagaaact
gttctggagtgttataactgtggatgtcgtaatgttttcctgctgggttttattcctgcc
aaggctgactctgtcgtcgtccttctctgcagacagccttgtgctagtcaaagtagtctg
aaggatattaattgggatagctcacagtggcagcccctgatccaggatcgctgctttctt
tcttggttggtgaagattccatcagagcaagagcagctaagagcacgccagatcacagcc
cagcagataaataaattggaggagctctggaaggaaaacccttctgccactctggaggat
ctagaaaaaccaggagtagatgaagaaccacaacatgtcctcctccggtatgaagatgct
tatcagtaccaaaacatctttggaccacttgtgaaacttgaggcagattatgacaagaaa
ctgaaggagtctcagactcaagataatatcactgttagatgggacctgggtcttaataag
aagagaattgcatactttactttacctaagactgattcagacatgcgtctaatgcagggg
gatgagatttgtctgagatataaaggagatttggcacctctgtggaaaggaataggtcat
gtcatcaaagttcctgataattatggagatgaaattgctattgagcttcgcagcagtgtt
ggagcacctgttgaagtcacccacaacttccaagtagattttgtttggaagtcaacctca
tttgacagaatgcagagtgcattgaaaacatttgctgtagatgagacctctgtttccggc
tacatctaccacaaacttctaggacatgaagtagaggatgtcatcattaaatgccaactg
ccaaaacgtttcactgcacaggggctacctgacctcaaccattctcaggtttatgctgtg
aagactgtcctccagcgccccctcagtcttatccagggccctccagggacaggaaaaact
gtaacatctgctactattgtctatcacttggctaggcaaggcaatggccccgtgttggtt
tgtgccccaagtaatattgctgtggatcaactgactgaaaaaattcatcagactggctta
aaagtggttaggctttgtgcaaagagtcgtgaagctattgattctccagtgtctttcctt
gcactgcacaaccagattcgcaacatggatagtatgcctgaactgcagaagttgcagcag
ttgaaagatgaaactggagagctatcctccgctgatgagaagcgttaccgtgcattgaaa
cggacagcagaacgggagctgcttatgaatgccgatgttatttgctgtacttgtgtggga
gctggagatcctcgtctggctaaaatgcagtttcgttccatcttgattgatgagagtaca
caggccactgagccagagtgtatggtaccagtggttctaggagctaagcagctgatcctg
gtaggtgatcattgtcaactgggtcctgttgtgatgtgtaagaaagcagcaaaagcgggt
ctgtctcagtccttgtttgagcgtcttgttgtcctggggatccgtccaattcgtctgcag
gttcagtaccgtatgcacccagcgctaagtgcgtttccatctaacattttctacgagggt
tcacttcagaatggggttactgcagcggatcgtataaagaaagggtttgattttcagtgg
ccacagccagacaagccaatgtttttctatgtaacgcaaggacaggaagaaattgccagc
tcaggcacctcgtatctcaacagaactgaagctgctaatgtggagaagattactaccaag
cttttgaaagcaggcgccaaaccggaccagattggaatcataaccccttatgagggccag
cgatcctaccttgtacaatacatgcagttcagtggctctctccacacaaaactttaccag
gaggtggaaatcgctagcgttgatgcatttcagggtagagagaaggacttcattatcttg
tcatgtgtgagagcaaatgagcatcagggaattggtttcttgaatgacccacgtcgtctg
aatgtggcacttactagagcaagatatggtgtgattattgttggaaacccaaaggctctt
tccaaacagccactatggaaccacctgctgaactattataaggagcagaaagtcctggta
gagggaccattaaacaacttgcgagagagtcttatgcagttcagcaaacctcgtaaactt
gtcaataccatcaacccaggtgcacgtttcatgagcactgctatgtatgatgccagagaa
gctatcatcccagggtctgtgtatgaccgaagtagccaaggccgtccttccaatatgtac
tttcaaacacatgatcagattggaatgattggtgctgggcccagccatgtagctgccatg
aacattcccattcctttcaacctcatgatgccaccaatgccacctccaggatactttggg
caggcaaatgggccagcagcaggtcgtggtgcattaaaagggaagaccagccgtggtgga
cgccagaggaaccgtgtccttgggaaccaaggaaatggccagtctaatatgccgaacagc
caggctagtcaggatgtagtatcccagccgttctcgcaaggtcctctaactcagggctac
atttctatgagtcaaccatcacaaatgagtcagcctggactctctcagccggagttgtct
caggacagttatttgggtgatgaattcaagtctcaaattgatgtggcattatcacaggat
tctacttaccagggtgaacgtgcataccaacatggcggagtgactgggctgtcacagtac
tag
DBGET
integrated database retrieval system
