Latimeria chalumnae (coelacanth): 102361123
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Entry
102361123 CDS
T02913
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcm01009
]
102361123 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102361123 (HDAC6)
04131 Membrane trafficking [BR:
lcm04131
]
102361123 (HDAC6)
03036 Chromosome and associated proteins [BR:
lcm03036
]
102361123 (HDAC6)
Enzymes [BR:
lcm01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
102361123 (HDAC6)
Protein phosphatases and associated proteins [BR:
lcm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102361123 (HDAC6)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
102361123 (HDAC6)
Membrane trafficking [BR:
lcm04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
102361123 (HDAC6)
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
102361123 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
102361123
NCBI-ProteinID:
XP_014351632
LinkDB
All DBs
Position
Un
AA seq
1204 aa
AA seq
DB search
MSAESPGSVISGRLLQPPGSGRRDWVGRRAGCHCKRSFAIMTSVPEQSSQRSLRASSRSP
RSTDSDTAKKGGRKEGQQKSGRQSLQEAKRKGRMEQNRGEGDIASQLSQLDLSTDAVVTG
TALVYDERLTEFYCLWDKSFHECPERVTTVMETIRQHGLLQRCVSVETRAASEEELLLVH
SPEFLELMKSSESMTEEEMKALSDRFDAVFLHPKSYSCACLAAGAVLQLVDQVMSAQVRN
GLAVIRPPGHHAQRDKMSRFCMFNNVAIAANYAKQKHGLERILIVDWDSHHGQGIQYIFE
DDPSVLYFSIHQYKHAELWPHLPESNWSAVGKGKGEGFNINIPWNQAGMRDADYITAFLQ
VLLPVAFEFRPQLVLVAAGYDCAVGDPLGEMAVSPACFAHLTHMLMPLANGNLILAFEGG
YNRRATAEGVCASLKILLGNPCPHLLPPFTPSQSALESISATIAAHVKYWKSLQNDALLL
SELKTEDAQPSTVEADEVINWSVEQVMRALPAQRTGLVYDEKMKEHYNMWDSCHPEFPQR
ILMIYNRHVELQLVKRCHPIPSRCATEEELQMCHSTEHISTIKSSVDMKPRDLHRLSNEY
NSIYICPKSYECALLATGSTFNVVEAVVTGKVQNGVAIVRPPGHHAEKGAACGFCFFNTV
ALAARFAQKLSGRKMKVMILDWDVHHGNGTQHMFEDDPSVLYVSLHRYDNGGFFPALEDA
NYNRVGCGDGEGFNVNVPWNGGRMGDPEYMAALQKVVMPVAYEFAPELVLVSAGFDAARG
DPLGGYLVTPECYAHMTHRLLGLAGGKVVVVLEGGYNLTSISESMSMCTRTLLGDALPDM
GTLKPPSPGALLSIRNVLKSHRRYWRSLQLNVQEFVKEEAEAPASPSGEVDVPSQASSSV
KGQRSPQASPAPAVEDSVEGPLPEGKRELDMTEAETGNSERSACMGEIIKGMESVCLSSF
GDENQQKSKEECSTGPPLATYPSPSSIPVGGARQKVKPASGSPESMVTDRKEGRLELLQG
ESSESKAALVSETAGMKDRTDRGKAAKSDGASTDGTGQAEGKLGEATGWSNPLSSRSISE
IFGISPSMEPKTFYAVEPLAWCPHLETVCPVPASGLNVFQACAECGSETENWVCLVCYQV
LCGRYVNEHMLMHSVNLGHLLVLSYADLSVWCYGCEAYIHNQVLFEAKNTAHRMKFGEDV
PGLH
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagagagccctgggtccgtcatcagcgggcgcctgctgcagcctcccggaagt
ggaaggagggactgggttgggcggagggcaggttgtcattgtaagaggagttttgccatc
atgacctcggtcccagaacagagcagtcagcggtccctgcgagccagctcccgatctccc
cgctccacagactctgataccgcgaagaagggtggaaggaaagaagggcagcagaagtcc
gggcgtcagagcctgcaggaggccaagaggaaaggcaggatggagcagaaccgcggtgaa
ggggacattgcatcccagctcagtcaactggatctgagtactgatgctgttgtgacgggg
actgcgctggtgtatgatgagagactgacagagttctactgcctctgggataagagtttc
catgagtgtccggagcgggtgacaactgtgatggagacgatacgtcagcacgggttgctg
cagcgctgtgtttccgtggagacacgggccgcttccgaagaggaactcctgttagttcac
agcccagaattcttagagctgatgaagtcctcggagagcatgactgaagaggagatgaag
gccctttcagatcgctttgatgctgtcttccttcatcctaaatcgtacagctgtgcctgt
ctggcagccggggcggtcctacagctcgtagatcaggtgatgtcggcacaagtccgcaac
ggtctggcagtgatcaggcctccgggacaccacgctcagcgggacaagatgagcagattc
tgcatgttcaacaacgtcgccatcgcagccaactatgcaaagcagaagcacggccttgaa
aggatcctgattgtagactgggatagtcaccacggacaagggatacagtacatctttgag
gatgatcccagtgtgttgtatttttccatacaccagtacaaacatgcagaactttggcct
catcttcctgagtcaaactggtcagcagtgggaaaggggaaaggagagggattcaacatc
aacataccttggaatcaggctggaatgagagatgccgattatattacagccttcctgcag
gttttgttacccgtggcctttgagtttcggcctcagcttgtccttgtcgctgctggatat
gattgtgctgtgggtgacccgttgggcgaaatggcggtttcaccagcgtgttttgctcat
ctgacacatatgttgatgcccttggccaacggaaacctaattctggcttttgagggtgga
tataaccgcagagccactgcagagggagtctgtgcatcattgaagatcttgctcggtaac
ccctgcccgcacctgcttcctcccttcactccaagtcaaagtgccttagaatccatttct
gccactattgctgcccacgttaagtactggaagagccttcagaatgatgcgttgttactc
agcgaattgaagaccgaggatgcccagcccagcactgtggaagccgacgaagttatcaat
tggagcgtggagcaggtgatgagggcgcttcccgctcagcggacggggctggtgtatgac
gaaaagatgaaggagcattacaacatgtgggacagctgtcaccctgaatttccgcaacgg
atattgatgatctataaccggcatgttgagcttcagttagtgaagcgctgtcatccaatc
ccatctcgctgtgccacggaggaggagctacagatgtgccacagtacagagcacatcagc
accataaaatcctcagtggatatgaaaccacgggatctccatcgcctgagcaacgagtac
aactccatttacatctgccccaagtcctacgagtgtgccctgctggccacgggttccacc
ttcaacgtggtggaagcagtcgttacggggaaggtgcagaacggggttgccatcgtccgt
cccccggggcatcacgcggagaaaggcgctgcctgtgggttctgcttcttcaacacggtc
gccctggcagcgaggttcgctcagaaactctcggggagaaaaatgaaggtgatgattttg
gattgggacgttcaccatggaaacggcacgcagcacatgtttgaggacgatccgagtgtg
ctgtatgtgtccctccatcgctatgacaacggcggcttctttcccgcactggaggatgcg
aactacaatcgagtcgggtgcggcgatggggaagggtttaatgtcaacgttccgtggaat
ggcggtcggatgggggatccggagtatatggccgccctacagaaggtggtgatgccagtc
gcttacgagtttgctcctgaactggttttggtgtctgcgggattcgacgccgcccggggt
gacccgctggggggttacctggtaaccccagaatgctacgctcacatgacccacaggctg
ctgggactggcaggagggaaggtggtggtggtgttggagggagggtacaacctgacctcc
atctcggagtcgatgtccatgtgcacgcggacgctcctcggggacgcgctgccggacatg
gggaccctgaagccgcccagccccggagctctgctgtctattcggaatgttctgaagagc
cacaggaggtactggaggagtctgcagctgaacgttcaagagtttgtgaaggaagaagcc
gaagcccctgcctcaccatcgggcgaggttgatgtaccttctcaggcaagctcgagcgtc
aaaggccaaaggtcaccccaggcatcgccagcaccagctgtggaagacagtgtggaaggg
cccctccctgaagggaaaagagagctggatatgactgaggcagagacaggcaactctgaa
aggtcagcatgtatgggggagataataaaggggatggaatctgtctgcctcagcagtttc
ggagacgagaaccagcagaagagcaaggaggaatgttccacaggcccgcccctggcaacc
tatccgagtcccagctccatccctgtgggcggagccaggcagaaagtaaagcctgcctcc
ggctcccccgaaagcatggtgacagacaggaaggaaggaaggttggaattgctccaaggg
gagagttcagagagcaaggctgccctggtatcagagacggcaggaatgaaagacaggaca
gacagaggcaaggcagcgaaatcagacggcgcttcaactgatggcacaggccaggccgag
gggaaactaggtgaagccacaggctggtctaacccactgagctctcgttccatctctgag
atctttggaataagccctagcatggaaccgaaaacattttacgcagtggaaccgttggca
tggtgcccccacctggagacggtgtgcccagtgcccgcatccggcctgaacgtgttccag
gcctgcgcagagtgcggcagcgagacggagaattgggtctgcctagtctgttaccaggta
ctttgtggccgctacgtgaacgagcacatgttaatgcacagtgtgaacttgggacatctc
ttggtactgagctatgctgacctttccgtctggtgctatggctgtgaggcctacatccac
aaccaggttttatttgaagctaagaatactgctcacagaatgaagtttggggaagacgta
ccaggactacactga
DBGET
integrated database retrieval system
