Leuconostoc carnosum: C270_05990
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Entry
C270_05990 CDS
T02321
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lcn
Leuconostoc carnosum
Pathway
lcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C270_05990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcn03019
]
C270_05990
03016 Transfer RNA biogenesis [BR:
lcn03016
]
C270_05990
Enzymes [BR:
lcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C270_05990
Messenger RNA biogenesis [BR:
lcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C270_05990
Transfer RNA biogenesis [BR:
lcn03016
]
Prokaryotic type
tRNA degradation factors
C270_05990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AFT82107
UniProt:
K0DEL3
LinkDB
All DBs
Position
complement(1261909..1264233)
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AA seq
774 aa
AA seq
DB search
MLLEQLKSQINGFLKENREQKFTAQNMADGLHMTSAADYKQVVNAMNALVREGEAVDQEG
RYQYNVNAGYVIGEYRANDKGFGFVKYDDELPDFFINPENTLQAMQGDQVRVSTLKPSAS
PDRGPEGKVEEILSHAYERIVGAFSLGSEAKNMIGELRISDKKAMNFKVLVNGDGLKPSD
GQVVVAEVVTFPDKTHPRELVAHVVETLGFKDEPGMDILQIVYAKKIPSDFPEDVLADAK
KIPSDVLASDWQGREDITEQTLVTIDGADTKDIDDAVVAWRLSNGNYHLGVHIADVSHYV
TEGSSIDKEAYNRGTSVYLTDRVIPMLPRNISNGIASLNPNVERLAMSAEMEINPEGRVV
NHRLHTSVMKSHARMTYDAVNKILEGDVFVQEEYAQLTPMFKVMGELHEILYKMRKKRGA
IEFDAPEAQIIVDDEGKAVDIQLRERGTAERMIESFMLAANETVAEHFDKLEVPFLYRIH
EVPDGERAKSFFEFSKALGHPVYGDPSKVTPVMLQKLMNDIAGDPAEQMISTMMLRAMKQ
AKYSPEPVGHFGLGAEYYTHFTSPIRRYPDLTVHRLIKWYEKHGYGIESQAKYADSLMKI
GEDTSTRERRAIDAERDVDALKKAEYMLDKVGLEFDGVVNSALKFGLFISLENTVEGLVH
ISNLTDDHYEYDESHAALIGRTKHHIYQIGQKVRVKVLRVNKEERTVDFILIDPESAPTT
TIRVATKDNGKFGKGRNRDERRQNERRGKSEGPKQKRGPLDAKQGQKRDSKRNF
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgttattagaacaattaaaatcacaaataaatggttttttaaaagaaaaccgtgagcaa
aaatttacagctcaaaatatggcagacggattacatatgacatctgctgctgattataag
caagtagttaacgctatgaatgctttggtcagagaaggagaagcggttgatcaggaaggc
cgctatcagtataatgtcaatgctggctatgtcataggtgaatatcgcgcaaatgataaa
ggctttgggtttgtcaaatatgacgatgagttgcctgacttctttattaatcctgaaaat
acattgcaggcaatgcaaggtgatcaagttcgtgtgtcgactttaaaaccatctgcttct
ccagatcggggaccagaaggtaaagtagaagagattttatcacatgcctatgaacgaata
gtgggcgcgttttcacttggttcagaagccaaaaatatgattggtgaattacgaattagc
gataagaaagctatgaactttaaagttttggtgaatggtgacggtttgaagcctagtgat
ggccaggttgttgtggctgaagtagtgacttttcctgacaaaacccatccccgtgagtta
gtggctcatgtggtagagactttgggattcaaagacgaaccaggcatggatattttgcag
attgtttatgcaaaaaagatacccagtgattttccagaagacgtgctagctgatgcaaaa
aagattccatctgatgtgttggcatctgattggcaaggtcgtgaagatattactgagcaa
acattagttacgatcgatggggcagacacaaaagatatcgatgatgcggtagtcgcatgg
cgattgagtaacggtaattatcatttaggtgtacatattgctgatgtgtcacattatgtt
actgaaggatcatcaattgataaagaagcatataatcgtgggacatcagtttatttgacg
gaccgtgtgattccaatgctacctcgtaatatttcaaatggtatcgcgtccttgaatccc
aatgtagaacggttggctatgtcggcagaaatggaaattaatccagaaggtcgagtagtt
aatcaccgtttacatacatcagtcatgaaatcgcatgcccgtatgacctatgacgcagtg
aataaaattttagaaggcgacgtttttgtacaagaagagtatgcgcagctgacacctatg
ttcaaggtcatgggagagctgcatgaaattttgtataagatgcgtaaaaagcgtggtgca
attgaatttgatgcaccagaagcacaaatcattgttgatgatgagggaaaagctgttgat
attcaattacgtgaacgcggtacagctgaacgcatgattgagtcatttatgttagcagct
aatgaaacggtagcggaacattttgataaattagaagtaccatttttgtatcgtatacat
gaagtaccggatggcgaacgggccaagtcgttcttcgagttttcaaaggcattggggcat
ccagtgtatggtgatcctagtaaagtgacgcccgtgatgttacaaaaattgatgaatgac
atagcaggtgatccagccgagcaaatgatttcaacaatgatgctgcgtgctatgaagcaa
gcaaagtattcgccagagccagttggtcattttggattaggtgcagaatattatactcac
tttacttcgcctattaggcgttatcctgatttgacagtacatcgtttaattaaatggtat
gaaaaacatggctatggcattgaatcacaagctaagtatgctgattcattaatgaaaatt
ggtgaggatacaagtacgcgtgaacgtcgtgctattgatgctgagcgagatgtagatgca
ttgaaaaaagctgaatatatgttggataaagtcggcctagagtttgatggtgttgttaat
tcggccttaaagtttggactcttcattagtttagaaaatacagttgaagggttagtgcat
atttcgaatttgactgacgatcactatgagtacgacgagtctcatgcggctttaattggc
cgtacaaaacatcatatttatcaaattgggcagaaagttcgagtgaaagtactacgtgtc
aataaagaagagcgtactgtggactttattttaattgatccagaaagtgcaccaacaaca
acgattcgagttgctaccaaggataatggtaagtttggcaaaggtcgtaatcgtgatgag
agacgtcaaaatgaacgacgtggtaaatctgaaggtccaaaacaaaaacgtgggccatta
gatgctaagcaaggacaaaagcgtgattcaaaacgtaatttctag
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