Larimichthys crocea (large yellow croaker): 104919632
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Entry
104919632 CDS
T04659
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104919632 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104919632 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104919632 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lco00535
]
104919632 (col9a3)
Proteoglycans [BR:
lco00535
]
Extracellular matrix (ECM) proteoglycans
Others
104919632 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
104919632
NCBI-ProteinID:
XP_010729997
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MAVFSALWVLLLCQLLTSSSAQRPGPRGAPGPAGPPGQPGKDGTDGKPGPAGLPGKQGPK
GKGGIPGVAGKPGLPGLPGVDGLTGPDGPAGKDGPPGEAGDVGPPGPPGSPGRGRPGAAG
LPGTNGLPGGAGPQGAAGPEGLPGLPGPSGADGPPGLPGTLHDLSGDLLCPAICPPGPSG
ASGMPGFKGHTGHKGDKGEVGKNGEKGDPGPPGPPGIPGTVGLQGPRGLRGLQGTMGSVG
DRGLPGFRGKPGIAGIIGKTGDAGEKGPQGFKGPKGEIGKIGPKGGPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRYGVVGEKGPNGLPGLQGKGGAKGSKGGVGDPGKSGETGPSG
EPGIPGDIGIPGERGIPGPRGVAGGIGPAGLIGPQGVKGFQGVNGALGDPGLPGPTGIRG
EFGERGPVGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGQPGKSGELGPKGVTGPQG
ELGARGPPGKEGPMGFQGEPGQPGIAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGMVGRPGPAGAAGKPGVAGSIGHPGARGPPGYRGLPGDLGDPGPRGDVGDQGDK
GSIGKAVDGPTGDQGYQGLPGVPGIVKDGRDGSPGDPGEPGESGRVGRTGHQGPPGICDT
SACQGTSPAGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgttctctgctctttgggtgctcttactgtgccagcttttgacatcatcctca
gcccagaggccgggccccagaggagctccagggccagcaggacccccaggacaaccagga
aaggatggcactgatggcaaacctggacctgctggactcccagggaaacaaggtcccaaa
ggaaaaggaggaataccaggggtagcaggaaaaccaggtctgccaggacttccaggggtg
gacggtttgacaggtcctgatggtcccgctgggaaggacggacccccaggggaagcaggt
gatgttggacctcctggaccacctggatctcctggcagagggagaccaggagccgcagga
ctacctggaaccaacgggttgccaggcggagccggaccccagggtgcagcgggtcctgag
ggtcttccaggacttcccggaccttctggcgccgatggaccaccaggccttcctggtact
cttcatgatctcagtggcgaccttttgtgtcccgcaatctgcccccctggtccctctggt
gcttccgggatgccaggattcaagggtcacactgggcataaaggagacaagggagaggtt
ggaaagaatggagagaagggtgatcctggtccacctggcccaccaggtattcctgggact
gtgggtctgcagggcccacgtggtctcagaggtttacaaggcacaatgggatctgtagga
gacagaggtctgcctggtttcagagggaaacctggcatcgccggcatcattggaaagaca
ggtgatgctggagaaaaaggaccacagggatttaaaggacccaaaggagaaattggtaaa
atcggtcccaaaggaggtcctggtggagctggacccaaaggagagcctggcattcctggc
agagatggcaaagatggtacaccaggattagatggcgagaagggtgatgctggacgctat
ggggtcgtcggagagaaaggaccaaacggccttcctggtcttcaaggaaagggtggtgcc
aagggatctaaaggaggtgttggtgatccagggaaatctggagagacaggaccctctgga
gagccaggtattcctggtgacattggcatcccaggagagagggggataccaggacctaga
ggagtggctggaggtattggaccagcgggcctcatcgggcctcagggagtgaaaggcttc
cagggggtaaatggagccttgggggatccaggtcttccaggtccaacaggaatccgtgga
gagtttggtgaaaggggtccagttggagcttctggagctaaaggagacatgggtgtggca
ggaagtgatggtttaccaggagagaatggagaacctggtccttttggcccagttggacaa
aaaggacagccagggaagagcggtgaactgggacctaagggagtgacaggtccacaagga
gagcttggggcaagagggcccccaggaaaagaaggacctatgggcttccaaggggagcca
ggtcagcctggaattgcaggaaagacaggcgtacctggtaaactggcaagcgagcagcac
atcagagaactgtgtggctcgatgatcgatgatcagatcgcacagctggccgctaacctt
cgaagacccctggcccctggaatggtgggccggcctggccctgctggagctgcaggaaag
ccaggagttgctggatctattgggcatccaggtgctcgtggaccaccagggtacagaggt
ctgccaggagaccttggagatccaggtcccagaggtgatgttggtgatcaaggtgataag
ggatccattggcaaagctgttgatggacccactggagaccaaggatatcaaggtcttcca
ggagtgcctggaattgtcaaagatgggcgtgatggatctccaggagatccaggtgagcct
ggagagtcaggcagggtaggtaggactggacaccagggacctcctggaatctgtgataca
tcagcctgccagggtacatcgcccgctgggaaatcctccaaccccaaaaaccattaa
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