Larimichthys crocea (large yellow croaker): 104920975
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Entry
104920975 CDS
T04659
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104920975
03015 mRNA surveillance pathway
104920975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104920975
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104920975
5.6.2.5 RNA 5'-3' helicase
104920975
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104920975
mRNA cycle factors
Common to processing body (P body) and stress granule
104920975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104920975
NCBI-ProteinID:
XP_019115575
UniProt:
A0A0F8CBA1
LinkDB
All DBs
Position
XII:complement(17154974..17171499)
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AA seq
1108 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPSHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGAGTNPMNSMNI
PIPFNLVMPPIPPPGYMGQVNGPTSGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGG
GDRHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQ
IDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctcacgttcctcgacaccgaggag
accgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccaaggccagacccagagccagctggacggacaggttaatggt
cctgatggtgtgctgcagaatggagacgaccctgtggtgaaagccagtcagctgctggca
gagttgaactttgaggaagatgaggaggacacctactacaccaaggacctaccttcacac
gcctgcagttactgtgggattcatgatccagcctgcgtggtctactgcaacaccagcaag
aagtggttctgtaatggccgtggaaacacgtccggaagccacattgtaaaccacctggtg
agagcaaagtccaaagaggtgaccctacataaagatggccctctgggggaaactgtattg
gagtgctacaactgtggctgtcgcaatgtcttccttctgggcttcatccctgccaaagct
gactcagtagtggtgttactgtgcaggcagccatgtgcgagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgctttctgtcctgg
ctcgtcaaaatcccttcagagcaggagcagctgagggctcgtcaaatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccactgccactttggaggatctggag
aagcctggtgtggacgaggagcctcaacatgtgctgctccgctatgaggatgcctaccag
taccagaacatctttggtcctcttgtgaagctggaggctgactatgataagaaactcaaa
gagtctcagacccaagacaacatcacagtcagatgggacttgggcctgaataaaaagagg
attgcttatttcactcttcccaagacagactctgacatgcgactgatgcagggagatgag
atttgcctgaggtacaaaggagacctggcccctccgtggaaaggcattggacatgtcatc
aaagtccctgataactatggtgatgagattgccatagagctgaggagcagtgccggcgct
ccagtggagatcccacacaactttcaggttgactttgtgtggaagtccacttcctttgac
aggatgcaaagtgcgctaaagacatttgctgtggatgagacttcagtgtcgggctacatc
taccacaaactgctcggacatgaggttgaggatgtggtcatcaagtgccagctgcccaaa
cgcttcactgctcaaggcctgcctgaccttaaccactcacaggtgtatgctgtgaagaca
gtcctgcagcgtcccctcagtctgatccagggtcctcctggcaccgggaagactgtaacc
tctgcgaccatcgtctaccacctggctagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacatcgctgtcgaccagctgacagaaaagatccaccagacaggcctcaaggtg
gtgaggctgtgtgccaagagcagagaggccatcgactcaccggtttccttcctggctctg
cacaaccagacccgtaacatggacagtatgcccgaacttcagaagctccagcagctgaag
gacgagactggagagctgtcctcttcggacgagaagcgctacagagctctgagacgcact
gctgagagggagctgctcatgaatgccgatgtgatctgctgtacctgtgttggggcgggt
gatccacgtctggccaagatgcagttccgctcaatcctgatcgatgaaagcacccaggcc
accgaaccggagtgcatggtgcctgttgtcctcggggctaaacagttgattctggtgggt
gatcactgccagctgggccccgtggtgatgtgtaagaaggcagctaaagcaggtctgtct
cagtctctgtttgagcgtctggtagttttggggatccggccaatccgtctgcaggtccag
taccgcatgcacccggcactcagcgccttcccttccaacatcttctacgagggctctttg
cagaacggagtcactgccgcggaccgtgtgaaaaaaggcttcgacttccagtggccacag
cctgacaagccgatgttcttttatgttacccaaggccaagaggaaattgccagctctgga
acatcctatctcaacaggacggaggctgccaatgtggagaaaataaccacaaggttgctg
aaggccggagcaaaacctgatcagatcggtatcatcacaccctacgaggggcagaggtcc
tacctggtccagtacatgcagttcagtggctccctccataccaaactctaccaggaggtg
gaaatagccagcgtggacgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtcagggccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctcaatgtg
gcgctcactagggccaggtacggtgtgatcattgtgggaaacccgaaagctctgtccaag
cagcctctgtggaaccacctgctgaactactacaaggagcagaaggtcctggtcgaaggt
ccccttaacaacctgagagagagcctcatgcagttcagcaagcctcgcaagctagtcaac
accatcaaccccggcggtcgatttatgagcacagccatgtatgacgccagggaggccctc
attcctggatctgtttatgaccgcagcagcaacggacgtacgtccaatatgtattttcag
acccacgaccagatcggtatgattggcgcaggcacaaatcccatgaactccatgaacatc
cccatccccttcaaccttgtaatgccccccatacctccacctggttacatgggacaggtc
aatggacccacatcaggtcgtggtggaggtatgaaaggcaaggcaggtagcggaggagga
ggtgggactcgaggtggccgtcaaagaaaccgcggcaacatggggaatcacagtggagga
ggagaccgccacatgagtggcagccaggccagccaggacctgggctcccagcctttctcc
caggggcctctgacgcagggctacatcaacatgagccagccatcacagatgagccagcct
gggctctcccagcctgaactctcacaggacagttacctaggagacgagttcaagtcccag
attgatgtggctttgtcccaggactccacctaccagggggagcgggcgtaccaacacggt
ggtgtgactggactgtcccagtactag
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integrated database retrieval system
