Larimichthys crocea (large yellow croaker): 104924309
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Entry
104924309 CDS
T04659
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X2
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104924309 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104924309 (ddx46)
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104924309 (ddx46)
Spliceosome [BR:
lco03041
]
Complex A
U2 snRNP components
U2 related factors
104924309 (ddx46)
Complex B
104924309 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
104924309
NCBI-ProteinID:
XP_010735926
UniProt:
A0A6G0I8D6
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All DBs
Position
XXII:5629702..5639706
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AA seq
1063 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRDRSRRERSRSRDRRRSRSRDRK
RARRSRSRERRRSRSRERRRSGSRTRARRSRSGSPSKSRRPDEKSRSKEKDNIDPVSEKK
KVKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQG
KKWSLEDDDDDDEDISTPMEADDDEDGDGKGENKEKEIKEEKKEEGDKEKETLMEQQAEE
DDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGELME
NDQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYESYRKNFYVEVPELARMT
QEDVNAFRLELEGITVKGKGCPKPIKTWVQCGVSMKILSAMKKHGYEKPTPIQAQAIPAV
MSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECK
KFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYV
VLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGR
SVVCSDVEQHVLVIDEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYPC
MSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHR
AGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPIELEQLWASFKDQQKAEGKT
IKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKR
VKDLSAPGAATGSAGGVTTTTAVPGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAE
AQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAET
IKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYL
AIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtccagacactacaggaaacgctccgcgtctcggggacgctcaggtagc
cgatcaaagagtcgctctccggacaaacgctccaagaaagacgaccgggaccgagaccgg
agcaggagagagcgctcacggagccgggaccgacggaggtcccggtccagagacagaaaa
cgagccaggcgctccaggagtagagagaggagaaggtcaagaagcagagagaggaggagg
tccggcagcaggacccgagctcgcaggtccagatctggaagccccagcaagagcaggaga
ccagatgaaaagtcgaggagtaaggagaaagacaacattgatcctgtatctgaaaagaaa
aaggttaaagaggaaaaagaggatgagaaggtcgaggatcaagactttgaccagaacaag
ctggaggaggagatgaggaagaggaaggagcgcgtggagaagtggagggaagagcagagg
aaaaaggccatcgaaaacatcggagagatcaagaaagagctggaggagatgaagcagggc
aagaagtggagcctggaagacgacgacgatgatgacgaggacatttcaactccgatggag
gccgatgatgatgaagatggtgacgggaagggggagaataaagagaaggaaataaaggag
gaaaagaaagaggagggtgacaaggagaaggagactctgatggagcagcaggccgaggag
gacgacgtggatcctctggatgcctacatggaggaggtaaaacaagaggtgaagaagttc
aacatgggagctatgaaaggaaatgataagaaaggggcaatgacggtaaccaaagtggtg
actgttgttaaaaccaagaaagggcctcatactcacaagaagaagggcgagctgatggag
aatgaccaggacgctatggaatactcatcagaagaggaggaggtggacctgcagactgct
ctgacaggcttccagaccaaacagaggaagatccttgagcctgttgaccacgggaagatc
cagtatgagtcataccgcaaaaacttctatgtggaggtccctgaactggccaggatgact
caggaggacgtgaatgcattcaggctggaactggaagggatcaccgttaaagggaagggc
tgtcccaaacccatcaagacttgggtgcagtgtggagtttctatgaagatcctcagtgct
atgaagaagcatggctacgagaagcccacccccatccaggcccaggcaatccctgcagtc
atgtcaggccgagacctcataggcatcgctaagaccggcagcggaaaaaccattgctttc
cttctgcccatgttccgacacatcatggaccagaggcccctggaggagtctgagggaccc
atctctgtaatcatgactccaaccagagagttggctctgcagatcaccaaggagtgtaag
aagttctctaaaccgctgggactcagggtggtgtgcgtttatggagggacgggtatcagc
gaacagattgctgagctgaagagaggagctgagatcatcgtgtgcacaccgggaagaatg
attgacatgttgggggccaacagcggtcgagtcaccaacctgcgcagggttacatacgtg
gtgttggatgaagcagacaggatgtttgacatgggctttgagccgcaggtgatgcgtatt
gtggacaacgtgcgtccagaccgtcagacagtcatgttttcggccaccttccccagagct
atggaggcgctagctcgtaggattctgtccaagcccattgaagtccaggtgggaggccgc
agtgtcgtctgctctgatgtggaacaacatgtgctggtgattgatgaagacaagaagttc
ctgaagctgctggagatcctgggtcactaccaggagaagggctccgtcatcatctttgtg
gacaagcaggagcatgcagacgcactgcttaaagacctgatgaaagcctcgtacccctgc
atgtcactgcacggaggaattgaccagtacgacagagacagcatcatcaacgattttaag
aatggagcatgtcgcctgatggttgctacgtctgtggcagccagaggtctggacgtcaag
cagctgatcctggtggtcaactacaactgtcccaaccactatgaggattacgtccacagg
gccggtcgcacaggccgagccggcaacaagggctatgcctacaccttcatcactgaggat
caagttcgctatgctggtgatatcatcaaagccttggagctgtccggctctcctgtcccg
attgaactagagcagctttgggcctccttcaaagaccaacagaaagcggagggtaagacc
attaagagcagcagtggtttctcaggaaaaggcttcaagtttgatgagacagaacatgct
ttggccaacgagagaaagaagttgcagaaggctgcacttggactgcaggactctgatgat
gaggacggagctcttgatattgaggagcaaattgagagcatgtttaactccaagaagagg
gtgaaggatctgtctgctcccggggcggccaccggttccgcaggaggcgttaccaccaca
acagctgtacccggagggctgccaggactcggacccacatctgctggaaacatccagaaa
ttggagatggccaagaggctggcactcaagatcaacgctcaaaagaacctgggcgctgag
gctcaggatgtgatgcagcaggccaccaatgccatcttgcggggtggcaccatcatgaca
ccgtctgtgtcagccaagaccatcgcagagcagctggcagagaagatcaatgcaaagcta
aactacacgcccgtggagaagctggaggaggagcggcaggcggctgaacaggccgagacc
atcaagagatacgaagaggagctggagatcaacgacttccctcagacggccaggtggaag
gtgacatctaaagaagctctgcagaggattggtgaatactctgaagccgccatcaccatc
agaggaacatatttccctccgggtaaagagcccaaggagggagaacggaagatctacctc
gctattgaaagtgcaaatgaactggctgtgcagaaagctaaaactgagatcacacggcta
atcaaagaagagctcatcagattacaaaattcctaccagccgacgagcaaaggccggtac
aaggtgttgtag
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