Larimichthys crocea (large yellow croaker): 104926119
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Entry
104926119 CDS
T04659
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104926119 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104926119 (pcf11)
03019 Messenger RNA biogenesis [BR:
lco03019
]
104926119 (pcf11)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104926119 (pcf11)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104926119 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
104926119
NCBI-ProteinID:
XP_010738201
LinkDB
All DBs
Position
XII:complement(11942743..11955284)
Genome browser
AA seq
1613 aa
AA seq
DB search
MDCLLISGYGIDKVGVVFPGSHSSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQSEEAPSPQPVAATPSPQPVAPPPPPAAPAATAVPASQSASNVSLSSLTQEQLIRQQ
LLAKQKQLLELQQKKIELELEQTKAQLAGGFVLPTSTPATTPTVPSTAPKPVSQSTPVVR
PWIPPQTQTDSKPSTRDPRLNRPGPPAASQPKEQSAGKKADIATTGSPALTPEKSSRPDK
ARTQRKEVLEEKPKSKSPSPMAKSVQSKNKQVEAEVQKSADGTKKDPRLRKRTQDKTGEA
KDDELKEKKRCTDKKERDEAARGADPQRFPRGKLVNGSVAKHDREESAEKAEFKSGGNAR
THARKRTRSRSRSRSPNSSPKRKDRRSPKSRARSSSLSPSPSHKTGKPRRVRTDEPEHGK
PGREDRLPPKKNQSESRRSKRPVEDRHSESRDSHSPRSHDGGSKETKDAPHRWRSGWEEN
KHPKLPEDSHMKPGPPQRHKPYNTPTRPTTPRTPKHRLSVDANMQIPEVLNSASKKDLLR
RASKRLESGEISKEDFLNMAHKIKHFFQYQEEKQQHPENWDDAGNFSKKLLTPSPSGQPR
PHEAMDPAELSYYEHKSKLRKTQVTHRPTGEEWEGDESPEEGEESVQGEKTGGSRSAGHP
PSHKYNRPPRDRQGERRSKEREEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPRE
SSEREWNSPLTERQRYDEREEQKSGYDAPRRYGTPADSRHPEPRRLEGPPPSGTVVHRNC
PSPSSLDPPTPRFERERLSPLHQKESAEASPVPRFESPNSEHSDDGPLNLDAHPHPPVPP
KSILKAPARGGPLSSVRQHSDSPGHTPPHDGGHPRYDGPGHMGPSRPHPPGWYEGSGPGR
YDDSSRFDGPHHQGPGRFEGSGPPLHNVPERFDGPHMSHGPIRGGDGMGRFDGPPHPQGP
GRFDGPIGQQPPVRFEGQGPGPGHFEGPIQRFNNMAPGPGSGQMGFQQQRPIRFDGPPNQ
MGPMRFDGPGPMRFEGPVQPGPRFDMPHQGVPPIYESAPGQQGPLRFAPQHNLQPPMRPM
APPIYENPMAPQQNFNMGPQRFPEPMNPQFSSGPMGFQTQPNLQQTGNFNMQPAPFNQPG
PATFYNSASPAVGMQQPVNMMGNLNQPFLPQNAVPFRQQTPQVVPPENHFGQVDVNDLLS
KLISTGIIKPSQPDAVPTTGADSSTAAPAAPPVEEEEEEDQEPEVEEGDLPDLTSFTIDD
MKQRYESVVTKLYSGNQCCLCSMRFTTAQTDMYADHLDWHFRQNHAGKVASKKITHRRWY
YTLRDWIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVKATKDQVGELCEI
CQEPFETYWVEEEEDWFLKNAIRVDDKNFHPSCFEDYKNTSSYIDVTPSPNKVLTDHPLS
AFIKKEEEEETSCAVAAAVKQEAESEAVELPDVKKELEEEVLPEEVQSDQSKL
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgttaatcagtggttatggtatcgataaggttggtgtagtttttcccggg
tcgcacagctcaaagatggacgacaaagcggcgagggaagatgcctgccgagagtatcag
tcctcgctcgaagacctgacgttcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccatctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttaagatcaacgtgggac
gatgtgtttcctctgaagaaactgtatgcgctggatgtccgggtcaactccgtggacccg
gcctggcccatcaagccgctgccgcccactgtcaatgccagcattcatgtcaaccccaag
tttttgaaacagtctgaggaggcgccctctccacagcctgttgctgccacaccatcgcca
cagccggtggcaccaccaccaccaccagcagcaccagcagcgacagcagtgcctgcttcc
cagtcggcctccaatgtaagcctgtccagcctgacccaagagcagctgatccggcagcaa
ctgctggccaaacagaaacagctcctggagcttcagcagaagaaaatcgagctggaactg
gagcagaccaaagctcagctggctggtgggtttgtattgccaacatcgactccagccacc
accccaacagtgccgagcacggcaccgaagcccgtgagccaaagtactcctgtggtccga
ccttggatccctcctcaaactcagacagattctaagccgtccaccagggacccccgtctg
aatcgcccaggccccccagctgcatcccagcccaaagaacagtctgctgggaaaaaggca
gacatagccacaacaggaagtcctgctctgacgcctgagaaatcctcccggcctgacaag
gccaggacccagaggaaagaggtgttggaggagaagccaaagtccaaatctccatctccg
atggctaaaagtgtccagagtaagaacaaacaagtggaggctgaggttcagaagtcagct
gatggcaccaagaaagatcctcgactgagaaaacgaacacaggacaagactggagaggca
aaagacgacgaactaaaggagaagaaaagatgtaccgacaagaaagagcgagacgaggct
gcacggggagcagaccctcagaggttccccagggggaagctggtgaatggctcggtggcc
aaacacgaccgcgaagagtctgcagagaaagcagagttcaagagtggaggcaatgcccgt
acacatgccaggaaacgtacacgctcgcgttccagatcacgctcacccaactcttcccca
aagaggaaggacaggcggtcgcccaagagcagagccaggagcagctccttgtccccgtcg
ccctctcacaaaacgggcaaacccagaagggtccgcacagacgaaccagaacacggcaag
cccggcagagaggaccggctcccacccaaaaagaaccaatcagaaagcagaaggtcaaag
aggccggtggaagaccggcactccgaatctagagactctcactccccgagaagccacgac
ggaggcagcaaggagaccaaggacgctcctcaccgctggaggagcggctgggaggagaac
aaacatccgaagctacctgaggactctcacatgaaacctggacctccccaaagacacaaa
ccctacaacaccccgactcgccccaccacccctcgaaccccaaagcatcgcctcagtgtg
gacgctaacatgcagatacctgaagtcctcaactctgcctccaagaaggacctgctcagg
agggccagtaagcgtctggagagcggcgagatttccaaggaagacttcctgaacatggcg
cacaagatcaaacatttcttccagtatcaggaggagaagcagcagcaccctgaaaactgg
gatgatgccggcaacttctccaagaaactgctgaccccgtctccttctggccagcctcgt
cctcatgaagccatggacccggcagagctgtcttactacgagcacaagtccaagctgagg
aagacccaggtcacacaccgcccgaccggagaggagtgggagggcgatgagagtcccgag
gagggcgaggaatcagtgcagggtgagaagacaggcggcagcaggagcgctgggcacccg
ccatcacataaatacaaccggccaccgcgggacaggcaaggtgaaaggcgcagtaaagag
cgcgaggagccccggcctccactcggccccatgatcgaggagtacaaccatggcaaagag
ttccccactctgaagtctctgccaggccttcgcttcaggaggagagctgaccctagagag
tccagtgagagggagtggaactcacccctgacagagcgccagcgctatgacgagcgcgaa
gaacagaaaagcggctatgatgctccacggagatatggcacacctgccgattctcgacac
cccgaaccacgaaggcttgagggacccccaccctctggcaccgtagtccacaggaactgt
ccgagcccgagcagtctagacccaccgaccccaaggtttgagcgtgagcgcctgtcccct
ctacatcagaaagaatctgcagaggcaagccccgttccgcgcttcgagagccccaacagt
gagcattcagacgacgggcccctcaacctggatgctcaccctcatcctcccgttccaccc
aaatctatcctaaaggcgccggctcgcggagggccgctgtcttctgtccgacagcacagc
gactccccgggacatacacctcctcatgatggaggacacccccggtacgatggacctgga
cacatggggccctccagaccacaccctccagggtggtacgaaggcagtggccctgggcgc
tatgatgactcatcccgttttgatgggcctcaccaccagggtcctggtagatttgagggt
agtggaccacctcttcacaatgtgccagagaggtttgacggcccccacatgtctcatggt
ccaattagaggcggcgatggtatggggcgatttgatggtccacctcaccctcagggccct
ggaaggtttgatggtccaattggtcagcagcccccagtcaggtttgagggacaaggacct
ggaccgggccactttgagggccctattcagcgctttaacaacatggctcctggtcctgga
tccggacaaatgggcttccagcagcagcggcctatacgcttcgatggcccaccaaaccag
atgggcccgatgaggtttgacggccctggtcccatgcgcttcgaaggtcccgtccagcca
gggcccaggtttgacatgccccatcagggtgtacccccgatctatgaatctgcccctggc
cagcagggccccctgaggtttgctccccaacacaacctgcagcctcccatgaggccaatg
gcaccgcccatctacgaaaaccccatggcccctcagcagaactttaatatgggacctcag
cggttcccagagcccatgaaccctcagttctcctcggggccgatgggattccaaactcag
ccgaacctgcagcagaccggaaacttcaacatgcagccagcacccttcaaccaaccaggc
cccgccaccttctacaactccgcttcccctgccgtcggcatgcagcagccagtaaacatg
atggggaacctgaaccagcccttcctgcctcagaacgcagtgcctttcagacagcagact
ccgcaggtcgtccctccagagaaccatttcggtcaggttgacgtcaacgacctgctgtcc
aaactcatctccactggcattatcaaaccatctcagcctgacgctgtgccaaccactggt
gccgattcttccacagcagctccagcagctccgcctgtggaggaggaggaagaggaggac
caggagccagaggtggaggagggagatctcccggacctcaccagcttcacaatcgacgac
atgaaacagcgttatgagagcgtggtgaccaagctatactcaggaaaccagtgctgtctg
tgcagcatgaggttcaccactgcccagacggacatgtacgccgaccacctggactggcac
ttcagacagaaccacgctgggaaggtcgccagcaagaagatcacgcaccggcgctggtac
tacactctcagggactggatcgagtttgaggagatcgctgacctggaggagcgagcgaag
agtcagttctttgagaaggaaaatgaggaggaggttcagaagaaccaggcggctgccaag
gagaaggagttccagagcgtgaaagccaccaaggaccaagtaggagagttgtgtgaaatc
tgtcaggagccgtttgagacgtactgggtggaggaggaggaggactggttcttgaaaaac
gccatcagggttgacgacaagaactttcatccttcctgttttgaagattataaaaatacg
tcgtcttacattgatgtcacaccgtcgcccaacaaggtgctcactgatcacccattgagc
gccttcataaagaaggaagaggaggaggaaacttcctgtgctgtcgctgctgcagtcaaa
caggaagcggagtctgaagctgtcgagcttcctgatgtgaaaaaagagttggaggaggag
gttttaccagaagaagtgcaatcggatcaaagtaaactgtaa
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integrated database retrieval system
