Larimichthys crocea (large yellow croaker): 104926566
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Entry
104926566 CDS
T04659
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03022
Basal transcription factors
lco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104926566
09124 Replication and repair
03420 Nucleotide excision repair
104926566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104926566
03400 DNA repair and recombination proteins [BR:
lco03400
]
104926566
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104926566
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104926566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
104926566
NCBI-ProteinID:
XP_027140646
LinkDB
All DBs
Position
XII:complement(10556971..10568538)
Genome browser
AA seq
343 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILFQSKRKRVIESHGQVRLGMMRH
LYVVIDCSRSMEDQDLKPSRLTSTLKLMEAFIDEYFDQNPISQVGIIITKNKRAEKLTEL
AGNPKKHIAALKKAVDTVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIILSSLTTCDPA
NIYELIKTLKSLKVRVSVIGLSAEIRVCTVLTRETGGSYHVILDESHFKELLILHVKPPP
ASSSSECSLIRMGFPQHTIASLTDQDAKPSFSMSHLDSGSGPGLSLGGYFCPQCHAKYTE
LPVECKLCGLTLVLAPHLARSFHHLFPLQAFIERPVEERQEDR
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagagccaagcgctgggaaggtggttatgagaggacatgggag
gtgctgaaggaggatgaatcaggctcactcaaagccacggtggaagagatcctgttccaa
tccaaaaggaaaagggtgatagagagccatggacaagtgaggcttggaatgatgcgtcac
ctctatgtggtgattgactgctcaagaagtatggaagaccaggacttgaaaccaagtcgc
ctcacctctactctaaagctgatggaagcttttatcgatgaatattttgaccaaaacccc
atcagtcaggtgggcatcatcatcacgaagaataaaagagctgagaagctgactgagctg
gcaggaaatccaaagaagcacattgctgctctgaagaaagctgtagacactgtgtgtgta
ggagagccgtccctatacaattctctcaacctggccatacagaccctcaagcacatgcct
ggacatacaagccgggagatcctgataatcctcagcagcctcaccacatgtgacccagcc
aatatctatgaactgatcaagaccctaaagtctctgaaggtgcgggtctcagtaatcggc
ctgtcagcggagatccgggtgtgtacagtgttgaccagggagacgggtggctcataccat
gtcatcctggatgagagtcacttcaaagagctgctgatactgcatgtcaaacctcctcca
gccagttcctcatctgaatgctctttaatacgcatgggttttccgcagcacaccatcgcc
tctcttactgaccaggatgccaagccttcattcagcatgtctcatctggacagtggcagt
ggtccaggtctgtctctgggaggatacttctgtccgcagtgccacgccaagtacacagag
cttcctgtggagtgtaaattgtgtggtttgactctggtgttggccccccatctcgccaga
tccttccaccacctcttccccctccaagcctttatagagagacctgtggaagagcgtcaa
gaagacaggtga
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