Larimichthys crocea (large yellow croaker): 104929813
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Entry
104929813 CDS
T04659
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104929813
03036 Chromosome and associated proteins [BR:
lco03036
]
104929813
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104929813
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104929813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104929813
NCBI-ProteinID:
XP_019117438
LinkDB
All DBs
Position
XII:complement(21695588..21738375)
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AA seq
1972 aa
AA seq
DB search
METPRGLEEEEGGALGSGTSVLLLKVTWHGEAPPPSVTTDSTVSSCCSGQLLQNGCRGSA
AADEILLIAPCCEKKQKTREENHLMEDKKKKKQEEKKKKDAAQKKATEQITKVPDSAKLD
PTPPLPPVNPSAVPSVPPSSGNGKRAPSGGQPQTAQQPQTLLQQRYPPREVPPRFRQQEH
KQLLKRGQPLPSGTLPLTTGRPATTEPAVAIHSSPSCSSSSTASLPTELPPQSGQGAQYD
NPLWGHLPANRSATSAASSTNLSGWDQLIIDQKDTEAWPSITLSQSQAPPGGCPLDTDPG
RLTSSSSSSSNSSSTSSSCSTVIMATGANSQTGHFPANHLSSKANSGPSPANHTGTSMLS
SQVAANRSWGSGPGPSHCPPQSSVGSEGKSDGPVGGGGSRGWGSTSSSSTNNFNLNLNPN
ANPSAWPMLGHDGGGTGAGSSGGANTISPPQPTPNLCNPPAPPPAQTSTCTGANTNSNSS
GIGSAWGSIMASDTSEPHPSPSTNVSFSSEPQNLKTDGPNHTNKQEPPSPIRNLPGWGSA
PVGLGSMAQPPPGGPQVNGEDGSSVWGNKGDSKTSSSKEAPGWDSGWGHGGSGAGNSGGW
GDQSAGGWGKQHTEETQGGWDAPSSPPQDPQASPWSRAVSTAAASEGSSDSMEGHPRHRD
HSSRDNPAPLLPAQDLDPRVLCNTGWGQTPVRQHTSWDMNDTKRKNDGGTESWGSGPTTP
SDAQGPSNTNMGPSQRTDPGGKNDVPGSQGPSGWGGSIAATNQPSPGWGEPPSNSKPTGG
SGGWGNTSAGGPTTNIPKNGSQSWGEEKPTGWDDSHIKSTSQGWGEQPKASHNWGNSGGS
NNAGDWREPEENKKSPANPGWEGESGGWKEKPRGWGMPSSGPGISGAGGNGGWGEPVCQR
PSGPPQGWGGKPQDGPSNNNNNSSSGGGGGGGSMGSWGGSGTAKQGGSWSGSKQESTAEP
TGWEEPSPPSIRRKMEIDDGTSAWGDPGTYNKAVNLWDRNNPGMSQAKVTTGGNNPPGPN
NNHPPSHNHSYHGPPAPLQNHTQNTPNPGPTSGPMDPVVVQHQSGPSHNRGPPLIAQGWG
EIPSSHTKSESTWGEPAPAPVSVDNGTSAWGKPTGSCGGWADGNPDGYGRGNPAMTSASC
KPAPKPMQDGWGGGGEELNLSGGQWDAEEGDMWNSTASQESNSSCNSWGNASKKVPQKGK
IPGKQEDAWIMNRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGI
TGHDYNNGLINKPMSCPRPPLLSKDPSADPRLPFMDKQMQSGMFGGGGAAQARAMQQPQP
PPQPPVPPLSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLN
QLYQLQLAYQRLQIQQQMLQAQRASGPIRQQEQQVARTINNMQQQIQQHQRQLAQALLMK
QQQQQPPPSHSGLHPGGAKSTLDSFPGHPQAPGLPDLQTKEPQSSPNNYSPYSLSGLNPN
MNVNCMEVGSLSMKEPPQPQSRLSQWTHPHSIESLSGNSSPLEPNLGKHGANLGPPGKPH
QLEDSYSPYNLMSSSESPTSPLVPPDSWGQGKSSSDKMANGTNINWPPEFCPGVPWKGLQ
NIDPETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSGGSSPTSSQNEALPPSTDWPVSG
YTSSFSLSSPETDDSGKLSEMKSTWSPGPISHSQASLSHELWKVPQGPRSSNAAPSRPPP
GLTNTKPSSTWGGNSLGLAQGWSSSYTTAGTTWSTDSSTRTSQWLVLRNLTPQIDGSTLR
TLCMQHGPLITFHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNR
FFAQGQLLGGTTSWQATPATNQTRMGGTGSGASHPIGHSPHWNNNNNGGGSSSSSSGLGT
GGAKTGGELLWGGVQQYSSLWGPPSGEEGRVMGSPTQINTLLPGDLLSGESM
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgccgagggggctggaggaggaggagggaggagcattaggaagtgggaccagt
gttttgttattgaaggtcacgtggcacggcgaggcccctcccccctccgttaccaccgat
tcaaccgtctcgagctgctgctccggtcagttactacaaaatggctgcagaggctccgcc
gccgccgacgagatcctcctgatcgctccatgctgtgagaagaagcaaaaaacacgagaa
gagaaccatttgatggaagataagaaaaagaaaaagcaagaagaaaagaaaaagaaagac
gctgctcagaaaaaggccacagaacagataaccaaagtgccagactctgccaagctcgac
cccacccctcctcttccccccgtcaaccccagtgccgttccgtctgtacccccgagcagt
ggcaatggcaagcgcgccccctccggaggtcagccgcagacagcacagcagccccagact
ctgctccagcagcgctacccgcccagagaggtgcccccacgcttccgtcagcaggagcac
aagcagctgttgaagaggggccagcctctaccctcggggaccctgcctctcaccacggga
cgtcctgccactactgaacctgcagtagccatacactcctctccctcctgctcctcttcc
tctacagccagcctgcctacagaactgcccccacagagcggccagggagcccagtatgat
aatcccctctggggacacctgccagccaacaggagtgccacaagtgctgcatcttccacc
aatctcagtggctgggatcaactgatcattgaccagaaggacacagaggcttggccttct
attactctcagccagagccaggcccctccaggaggatgccctttggacactgaccctggt
cgtctgaccagcagcagcagcagcagcagcaacagcagtagtactagtagtagttgcagt
acagtgattatggccacaggggccaatagccagacaggccacttccctgccaaccacctt
agcagtaaggccaacagtgggcccagccctgccaatcatactggaaccagcatgctctct
agccaggttgcagccaatcgcagctggggctctgggcctggaccttcccattgcccccct
cagtcctcagtggggagtgaagggaagagtgatggcccagttggaggaggaggtagcagg
ggctggggcagtacttcatcatcctccaccaacaactttaacttgaacctaaaccctaat
gccaacccttctgcctggcctatgttggggcatgatgggggtggcacaggggcaggcagc
tcagggggagccaacaccatttcacctcctcaacctacacccaacctctgtaatccacct
gcccccccaccagcccagaccagcacctgtaccggagccaacactaacagcaactcctcg
gggattggcagcgcctggggtagcataatggcctctgacacatcagagccacacccctcc
ccgtccacgaatgtgtctttcagttcagaacctcagaaccttaaaactgatggaccaaat
cacactaataagcaggaaccccccagccccatccgcaacttgcctggctggggtagtgca
cctgtaggcttgggttccatggcccaacccccaccagggggaccacaggttaatggagaa
gatggtagctcagtatggggtaacaagggtgactcaaagacatcttcatccaaggaggca
cctggctgggactctggctggggccatggtggaagtggagcaggaaactcgggaggctgg
ggtgaccagtctgctggaggctgggggaagcagcacactgaagagacccagggaggctgg
gatgcccccagctctcctccccaggatccacaggctagtccttggagccgagctgtgagc
acagctgccgcaagtgaagggagcagtgacagcatggaaggacatccccggcacagagac
cactcatctcgagataatccagctcctctgctgcctgcccaggatctggaccccagagtg
ttgtgtaacactggttggggacagacccccgttcgccagcacacctcctgggatatgaac
gatactaaacgcaagaatgatggaggcactgaatcatggggctctggcccaaccactcca
agtgatgcccaggggccttccaacactaatatgggcccatctcagaggactgaccctggg
ggcaaaaatgatgtgcctggttctcagggaccctcaggttggggtggaagcatagctgct
accaaccagcctagccctggttggggagagccacccagcaacagtaaacccacaggtggc
tctggtggctgggggaacacttcagcaggaggccccaccaccaatatacccaagaatgga
agtcagtcctggggagaggagaagccaactgggtgggatgattctcacatcaagtcaaca
tcccaaggctggggagagcaacccaaagcatcccacaactggggcaatagtggagggagc
aataatgcaggggactggagagaaccagaagaaaacaaaaagagtcccgccaaccctggg
tgggagggagaatcaggaggctggaaggaaaaaccacgaggctggggaatgccttcttca
ggacctgggatatctggagctggaggaaatgggggatggggagagcctgtttgccagcgt
cctagtggccctccccaaggttggggaggcaagcctcaggatgggcctagtaataataat
aataatagtagtagtggaggtggaggtggaggtggaagcatgggctcttggggtggctca
ggcacagcaaagcagggtggaagctggagtggcagtaagcaggagtccactgctgagcct
acaggctgggaagaaccatccccaccttcaatccgacgtaaaatggagatagatgatggg
acctcagcttggggtgaccctggtacctacaacaaggcagtcaacctgtgggacaggaac
aatccaggaatgtcccaggctaaagttaccactggaggcaataaccccccaggcccaaac
aacaaccaccccccctctcacaatcactcctatcatgggccccctgcacctttacagaac
cacacccaaaacaccccaaacccagggcccaccagtgggcccatggatcctgttgttgtc
caacaccagtccgggccatctcacaacaggggtccccccctgatagctcaaggttgggga
gagatacctagttcccacacaaaatcagagagcacttggggggaacctgcacccgcaccg
gtcagtgtggacaatgggacgtctgcctggggcaaacctaccgggagctgtggaggctgg
gcagatggcaacccagacggctatggcaggggcaacccagcaatgacatctgcatcttgc
aaacctgcccctaaacctatgcaagacggatggggaggtggaggtgaagagctgaacttg
tcgggaggtcaatgggatgctgaagagggagacatgtggaacagcactgcctcccaggag
agcaactcctcctgtaactcttggggcaatgcatctaaaaaggtcccacagaaggggaag
atcccagggaagcaagaggatgcctggatcatgaatcgtctcatcaaacagctgacagac
atgggcttccctagggatccagcagaggaggctctgaagagcaacaacatgaacctggat
caggccatgagtgccctgctggagaagaagactgagctggacaagcggggaatggggata
accggccacgactacaacaacggactcatcaacaagcccatgagctgccctcggcctccg
cttctttccaaagacccctcggcagacccccgcttgcccttcatggacaagcagatgcag
agtggaatgtttggcggtggtggagcagcacaagcccgggccatgcagcagccgcagccg
cctcctcagccgccagtgccgcctctcagttcctctcagcctagtctacgtgctcaagtg
cctcagtttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacatt
ggtctgaatcctgcacttttaacctcaccaataaaccctcaacatatgacccttctgaat
caactttaccagctgcaactggcataccagcgtttacaaattcagcagcagatgttgcag
gcgcagcgcgcctctggccccattcgacaacaagagcagcaagttgcacgtacaatcaat
aacatgcagcagcagatccaacagcaccagcgtcagctggcccaggctctgctgatgaag
cagcagcaacagcagccacccccctcccactcgggcctgcatcctggtggggccaaatcc
accctggattcatttccaggtcacccccaggctccaggcctccctgacctgcagaccaaa
gagccacagtcatctcccaacaactacagcccctactctctttctggactgaatccaaac
atgaatgtaaactgcatggaggtgggaagtctatctatgaaggaaccaccccagcctcaa
tcgcgcctgtcgcagtggacgcatccccactccatcgaaagcctctctggaaactcctct
cctctagaacccaacttgggcaagcatggtgccaacctgggtccacctggtaagcctcat
cagctggaggactcttacagcccctacaatctgatgtccagctcagagtctcccaccagc
cccctggtccctcctgacagctgggggcagggcaagagcagcagtgacaagatggccaat
gggaccaatatcaactggccaccagagttctgccccggtgtgccctggaaaggccttcag
aatatcgaccccgagaccgaccccaacgtgacccccggcagcgtccccagcgggcccact
atcaacaccaacatccaagatgtcaaccgctatctgctgcgggacaggagtggaggctcc
tctcccacttcatctcagaacgaggctctgcctccctccactgattggccagtcagtggc
tacactagctcgttcagtctgtcgtccccggagacggacgattcaggtaaactgtcagag
atgaaatctacttggtctccaggccccatttctcacagccaggcctctctgtcccatgag
ctgtggaaggttccccaaggcccacggagcagcaacgcggccccttcccgccctccacct
ggcctcaccaacaccaagccttcctcaacctggggaggcaactccctgggtctggcccaa
ggctggagcagctcttataccacagcaggtaccacatggagtacagacagctccactagg
accagtcagtggctggttctgaggaaccttactccacagattgacggttcgactctgcgt
acactgtgcatgcagcacggccccctcatcacattccacctcaacctgacacagggcaac
gctgtggtgcgttacagctccaaggatgaagccgccaaggctcagaagtccctgcacatg
tgcgtgctcggtaacaccaccatcctggcagagtttgctggggaagaggaagtgaaccgc
ttctttgcacagggccagttgcttggtggaacaaccagctggcaggcgactccagccacc
aatcagacaaggatgggtgggaccgggtctggagcctcccatccaatcggtcactcaccc
cactggaacaacaacaacaacggcggcggcagcagcagcagtagcagtggcctgggaaca
ggcggagcaaagacgggcggagagttgctgtggggtggagtgcagcagtattccagcctg
tggggacccccaagtggagaggagggacgggtcatggggagtcccacccaaatcaatacg
ctgttgcctggcgacctgctgagtggggagtccatgtag
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