Larimichthys crocea (large yellow croaker): 104929882
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Entry
104929882 CDS
T04659
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104929882 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
104929882 (lig4)
Enzymes [BR:
lco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104929882 (lig4)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104929882 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104929882
NCBI-ProteinID:
XP_010742821
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Position
XIX:2481102..2486852
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AA seq
910 aa
AA seq
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MEGTSKSDAAGPPSVAAQVPFLHLCTTLEKIQKSKLRPDKNKILGDFVGSWRKFHAALHK
DDPKTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYINVLGLPNNGPEANKLLNYRAP
TTSQGEAGDFASMAYFVIKKRCTSEGNLTVKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDANDLYNVNTDLNKVCQQLHNPTVSL
SEISIELFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYYSRNA
FDYTQQFGASPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTAETFMQKGSKFDIKRLM
DDSELQTCYCVFDVLLVNGEKLGKKPLEKRYETLQTVFTPVNGRMHLVPKKDGRTMQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYWGKGR
RGGMMSHFLGAVAEAPKPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRSKASGKLASRHLRIDDNEPQKKKRKMPAKPKKVAGLIDHFKPQDLSGVRKET
DMFEDVEFCILNGTEDHPKAELEKGVARCGGIVVQNPGLDTYCIIAGVENMRVKNLISSD
KHDVVWAAWLLECLDQKDVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDELQLRE
VFSRISSVDMSGAVNAAQVEERYGWEDLPTSLFRPFKVYMDRFADIGDPKTAITATCLDI
RALEFRYHGGEVMEKLEEGVSHVIIAEETRLLDLRTLRRCFRKKFKIVRESWVTDSITAG
YLMNDTDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagtgatgctgcaggtccgccctctgttgctgctcaggttcct
ttccttcacctgtgtaccaccttagagaaaatccagaaatccaaactccgtcctgataaa
aacaaaatcctcggggatttcgttgggtcatggaggaagtttcatgctgctctccacaaa
gatgaccccaaaacaacagactctttctacccagctatgcgtctcatagtccccccgttt
gaacgagagcgcatggcgtatggcatcaaggagaatatgttggctaaactctatatcaac
gtattaggtctcccaaataatggcccagaagccaataagctgttgaactaccgtgcacca
actacttcccaaggagaagctggagactttgccagcatggcgtactttgtaataaagaaa
cggtgcaccagtgagggaaacctcactgtcaaagaagtcaacgactttctcgactctgtg
gccatcaacaacgccagcaagcagaaagatcttgtaaaaaagagtctgctgcacctcatc
acccagagctcagcgcttgagcaaaaatggctcattaggatgattctgaaggacatgaag
ctcggtatcagcaaagaaacggtcctacaagtcttccacccggatgctaatgacctctac
aatgtcaacacagacttaaacaaggtgtgccagcagctccacaaccccactgtgtcttta
agtgaaatttctatcgagctcttctctgcctttaagcccatgctggcagctgtggcgaac
atccgcaatgtggagaaacagatggggaacagccccttttacattcagaccaagctggat
ggggagcggatacaactgcacaaagatggcgatgtgtacaagtactatagccgaaatgcc
tttgactacacgcagcagtttggagcatccccactggagggctcgctcacaccttacatc
cacaacgtctttaaaagccacgttgtaaactgtatccttgatggtgagatgatggcgtac
aacccgaccgctgagaccttcatgcagaaagggagcaagttcgacatcaagagactcatg
gacgactcagagttacagacgtgctactgcgtgtttgacgtgttgttagtcaatggtgag
aagcttggcaagaaaccgctggagaaacgctatgagacccttcagacggttttcaccccg
gtcaatggaaggatgcacctggtaccaaagaaagatggcagaaccatgcaggaggtggtg
aatgccctcaatgatgccattgacaacagagaagaggggatcatggtgaaggatcctttg
tccatctacaaacctgacaaacgaggggagggatggctaaaaataaagccagaatatatg
gatggcttgatggatgagcttgacctgctgattgtcggtggctactgggggaaaggaaga
cggggtggtatgatgtcccatttcttaggtgctgttgcagaagctccaaagcctggtgag
aaacctacagttttccacacactatgccgcatcggctctggctacaccatgaaggagttg
tatgaccttggtttaaagctagccaaacactggaaagtctatcgtaaaaatgacccacca
gcatccatcttgtgtggaacagagaaaccagaagtttacatcgaaccctgcaactctgtc
atcatccaggtcaaggcggctgaaatagtcggaagtgatatgtataaaaccaactgcact
cttcgcttccccaggattgagaagatccgtgaagacaaggagtggcaccagtgcatgact
ctggcagagctggatcagtttcgcagcaaagcatctgggaaacttgcctcgcggcacctt
cgcattgacgataacgaaccacaaaagaagaagcgcaagatgcctgccaaacccaagaag
gtggccgggctaatcgaccactttaaaccccaggacctttctggggtaagaaaggagact
gatatgtttgaggacgtggagttctgtatcctgaatggcacagaggatcaccccaaggct
gagctggaaaagggtgtggccaggtgtggaggtatcgtagttcaaaacccaggactggac
acttactgcattattgctggtgtggagaacatgcgagtgaaaaacctgatttcgtccgac
aagcacgacgtggtgtgggccgcctggctgctggagtgcctggaccagaaggatgtggtc
ccatggcaaccgcgacacatgatccacatgtcgccctccaccagggagcactttgccaaa
gagtacgacagctatggcgacagctactttgtggacacggacgagctgcagctgcgggag
gtgttcagccggataagcagcgtggacatgtctggagcggtgaacgctgcacaggtggag
gagcgttacgggtgggaggaccttcccaccagcttgttcagacccttcaaggtttacatg
gaccgctttgccgacatcggcgaccctaaaacagccataactgccacctgtttggacatc
agggcgctggaatttcgctaccatggtggggaggtgatggagaagttagaggaaggagtc
tctcatgtgatcattgcagaggaaacaagacttctggatttaaggactctgaggcgctgc
tttaggaagaagtttaagattgtccgagaatcttgggtgactgattcaatcacagcaggg
tatctgatgaatgacaccgactatttagtctga
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